CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	extracellular, nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88756
EER90144
EER95744
EES02294
EES02313
EES06373
EES13610
EES13936
OQU88309

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	EER95744	AT3G12470.1	21798944
AT5G19080.1	EES02313	AT3G12470.1	21798944
AT5G19080.1	OQU88309	AT3G12470.1	21798944
AT5G19080.1	EER88756	AT4G25760.1	22291198
AT5G19080.1	EER90144	AT4G25760.1	22291198
AT5G19080.1	EES06373	AT4G25760.1	22291198
AT5G19080.1	EES13610	AT4G25760.1	22291198
AT5G19080.1	EES13936	AT4G25760.1	22291198
AT5G19080.1	EES02294	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038127_P001	Maize	nucleus	91.18	92.26
TraesCS1B01G258900.1	Wheat	cytosol	54.41	81.14
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	48.53	80.1
Os05t0397650-00	Rice	nucleus	78.24	74.93
CDY13950	Canola	cytosol	19.41	66.67
CDY13958	Canola	cytosol	32.94	58.33
GSMUA_Achr3P09070_001	Banana	cytosol	45.88	56.73
Solyc01g080080.2.1	Tomato	nucleus	22.06	48.08
CDX92559	Canola	mitochondrion	50.59	46.24
Bra002208.1-P	Field mustard	mitochondrion, nucleus	50.59	45.99
CDY13949	Canola	mitochondrion	52.06	45.85
KRH51029	Soybean	mitochondrion	45.0	45.54
KRH11381	Soybean	mitochondrion	49.71	45.31
Bra020773.1-P	Field mustard	mitochondrion	48.24	45.18
KRH20904	Soybean	mitochondrion	49.12	45.01
CDY05235	Canola	mitochondrion	48.24	44.93
CDY24715	Canola	mitochondrion	47.94	44.9
AT3G06140.1	Thale cress	mitochondrion	46.76	44.29
AT5G19080.1	Thale cress	cytosol	48.82	43.92
VIT_05s0020g02680.t01	Wine grape	mitochondrion	50.0	43.37
KRH02118	Soybean	cytosol, mitochondrion	34.71	42.75
PGSC0003DMT400073576	Potato	plastid	48.24	42.6
Solyc01g098750.2.1	Tomato	plastid	47.35	41.71
EER92535	Sorghum	nucleus	45.0	38.06
VIT_14s0128g00180.t01	Wine grape	mitochondrion	47.65	36.4

Protein Annotations

EnsemblPlants:EES19487	EnsemblPlantsGene:SORBI_3009G129000	EntrezGene:8085095	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
PRINTS:PR01217	ProteinID:EES19487	ProteinID:EES19487.1	RefSeq:XP_002441057.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0001A89320	UniProt:C5YXL4	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr9:-:48249154..48252672

Molecular Weight (calculated)

37952.7 Da

IEP (calculated)

6.357

GRAVY (calculated)

-0.666

Length

340 amino acids

Sequence
(BLAST)

001: MGASSSRRRR DDYYPPPHHY SSYPPPPPPP PHHHHPPPPP PPPHHRPPPP PPPSSYYYHP HPPPPHAYHG PWHPAPAPPP QPQPPALTGP PPEFVEHQQA
101: QKVKNYVNLH KDTIRLVPDD ADPDRRLVAF TFDAITDGSV TIYYFAKEEK DCSFSSIYPE LQTPTKIPFE KGLAQRFIQP SGSGVDLGFF SLDELSSSSG
201: EVFPLVVYAE AYPSPEEGGP SVNSTRAQIT LAVLEKHNND LQVKVVKQIL WIDGVRYELQ EIFGMVNSTE SDVADADADD TGKECVICLT EPRDTAVMPC
301: RHLCLCSECA KTLRFQSNKC PICRQPVEKL MEIKVRSSEP

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.