CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88029
EER88427
EES03295
EES07849
KXG22639
KXG22761
KXG23504
KXG29961
KXG34492
KXG39164
OQU77084

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	EER88427	AT1G01440.1	21798944
AT5G48385.1	EES03295	AT1G01440.1	21798944
AT5G48385.1	KXG22639	AT1G01440.1	21798944
AT5G48385.1	KXG29961	AT1G01440.1	21798944
AT5G48385.1	KXG23504	AT1G15570.1	21798944
AT5G48385.1	OQU77084	AT1G15570.1	21798944
AT5G48385.1	EES07849	AT3G08530.1	21798944
AT5G48385.1	KXG22761	AT3G08530.1	21798944
AT5G48385.1	EER88029	AT3G13990.1	21798944
AT5G48385.1	KXG39164	AT3G13990.1	21798944
AT5G48385.1	KXG34492	AT3G22440.1	21798944
AT5G48385.1	KXG34492	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005107_P001	Maize	cytosol	93.1	93.45
Zm00001d019890_P001	Maize	nucleus	92.35	92.7
Zm00001d019892_P001	Maize	nucleus	69.4	91.85
HORVU5Hr1G051330.1	Barley	cytosol	82.46	82.0
TraesCS5A01G168100.1	Wheat	cytosol	81.72	81.26
TraesCS5D01G172300.2	Wheat	cytosol	82.46	79.78
TraesCS5B01G164900.2	Wheat	cytosol	82.09	79.42
Os09t0248300-01	Rice	cytosol	75.93	75.09
Os09t0248200-01	Rice	cytosol	75.75	74.5
GSMUA_Achr2P05710_001	Banana	nucleus	24.07	66.49
GSMUA_Achr8P29000_001	Banana	nucleus	62.13	61.67
GSMUA_Achr9P08130_001	Banana	cytosol	59.33	58.89
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	62.31	56.8
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	58.02	55.24
KRH66282	Soybean	cytosol	55.97	54.95
KRH07289	Soybean	cytosol	55.41	54.4
KRH66280	Soybean	cytosol	54.85	54.04
PGSC0003DMT400053214	Potato	cytosol	54.66	53.66
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	21.27	53.52
Solyc06g007640.2.1	Tomato	nucleus	53.36	53.36
PGSC0003DMT400071153	Potato	nucleus	54.1	53.21
Solyc06g082930.2.1	Tomato	nucleus	52.43	52.52
CDY05684	Canola	cytosol	50.37	52.22
Bra020704.1-P	Field mustard	cytosol	50.56	52.22
CDY48750	Canola	cytosol	51.31	52.18
Bra036176.1-P	Field mustard	cytosol	50.0	51.54
CDY00066	Canola	cytosol	50.75	50.94
AT5G48385.1	Thale cress	cytosol	52.8	50.72
Bra037489.1-P	Field mustard	cytosol	51.68	50.64
EER99638	Sorghum	cytosol	33.58	29.17
KXG34492	Sorghum	nucleus	26.87	23.3
KXG31679	Sorghum	nucleus	23.51	19.91
CDX86307	Canola	nucleus	51.49	18.49
EER92706	Sorghum	plastid	17.35	18.13
EER93089	Sorghum	plastid	15.3	17.75
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	51.68	17.13
Bra037488.1-P	Field mustard	cytosol	0.19	0.11

Protein Annotations

EnsemblPlants:EES02294	EnsemblPlantsGene:SORBI_3003G029100	EntrezGene:8084331	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	ProteinID:EES02294	ProteinID:EES02294.1	RefSeq:XP_002457174.1
SEG:seg	unigene:Sbi.8242	UniParc:UPI0001A84F5A	UniProt:C5XLU0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr3:-:2548860..2563326

Molecular Weight (calculated)

60224.1 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.469

Length

536 amino acids

Sequence
(BLAST)

001: MPDMESVAAL MDSTSSKIQQ LQEAFAELES QSAVSMNLKW KQLEDHFRGL EQSLKKKFDE LKEQEEEFQE IVAKSDLMLE QREAAVVAKE LTSLERLQEK
101: RDAALAMIFS KSRLSLPVPA INPMNKALDN LGVKWPKPAS EESVHLQDGN AAVRPRSELA SLCEEMNVKG LHKFISDNRK NLAAIREEIP SALKKTSDPY
201: GLVLDSLEDF YSGDNLVLDG KKDGDLLGVR RTCLMLMESL GQLQTNNITC FSLEGHMLTT NIVERAKKIA FEWKSKLDNL DIDASNGNCL EAHAFLQLLA
301: TFGISAEYNE DDLCKLLPYV SRRRQTPELC RLLGLSQKMP GVIEVLVESG RPIDAINLAY VFELTEQFEP VQLLKAYLRD VKKVSHARNV KGSPGAQNEM
401: NERELSALKS VIKCIEEHKL EEQYPVDPLQ KRVLQLEKAK ADKRRAVEAA KPQSKRPRAN GSAFAHRATG FADKSFYPAA ATPERHPSNP YERQFVYGAE
501: AHLPPMVSSA SYTMQPAHGP YYGNGYPVQY QVPYIH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.