Factsheet for GSMUA_Achr8P29000_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P14000_001
GSMUA_Achr2P12700_001
GSMUA_Achr3P07830_001
GSMUA_Achr3P20190_001
GSMUA_Achr3P25070_001
GSMUA_Achr3P25340_001
GSMUA_Achr4P28440_001
GSMUA_Achr7P01520_001
GSMUA_Achr7P14150_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr1P14000_001	AT1G15570.1	21798944
AT5G48385.1	GSMUA_Achr3P25340_001	AT1G15570.1	21798944
AT5G48385.1	GSMUA_Achr3P07830_001	AT3G13990.1	21798944
AT5G48385.1	GSMUA_Achr3P20190_001	AT3G13990.1	21798944
AT5G48385.1	GSMUA_Achr2P12700_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr4P28440_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr7P01520_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_AchrUn_...	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr2P12700_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_Achr4P28440_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_Achr7P01520_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_AchrUn_...	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05710_001	Banana	nucleus	29.81	82.99
GSMUA_Achr9P08130_001	Banana	cytosol	77.59	77.59
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	84.44	77.55
HORVU5Hr1G051330.1	Barley	cytosol	64.81	64.94
TraesCS5A01G168100.1	Wheat	cytosol	63.52	63.64
TraesCS5D01G172300.2	Wheat	cytosol	64.63	63.0
TraesCS5B01G164900.2	Wheat	cytosol	64.44	62.82
Os09t0248300-01	Rice	cytosol	62.78	62.55
EES02294	Sorghum	nucleus	61.67	62.13
Os09t0248200-01	Rice	cytosol	62.22	61.65
Zm00001d019890_P001	Maize	nucleus	60.37	61.05
Zm00001d005107_P001	Maize	cytosol	59.63	60.3
KRH66282	Soybean	cytosol	59.26	58.61
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	60.93	58.44
KRH07289	Soybean	cytosol	58.33	57.69
KRH66280	Soybean	cytosol	57.96	57.54
Zm00001d019892_P001	Maize	nucleus	43.15	57.53
Solyc06g007640.2.1	Tomato	nucleus	55.93	56.34
PGSC0003DMT400053214	Potato	cytosol	56.85	56.23
CDY05684	Canola	cytosol	52.78	55.13
Bra020704.1-P	Field mustard	cytosol	52.96	55.11
CDY48750	Canola	cytosol	53.52	54.84
PGSC0003DMT400071153	Potato	nucleus	54.63	54.13
Solyc06g082930.2.1	Tomato	nucleus	53.33	53.83
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	21.11	53.52
Bra036176.1-P	Field mustard	cytosol	51.48	53.46
Bra037489.1-P	Field mustard	cytosol	54.07	53.38
CDY00066	Canola	cytosol	52.59	53.18
AT5G48385.1	Thale cress	cytosol	53.52	51.79
GSMUA_Achr5P16090_001	Banana	nucleus	42.22	37.5
GSMUA_Achr9P09220_001	Banana	nucleus	24.63	33.59
GSMUA_Achr2P12700_001	Banana	nucleus	27.59	30.47
GSMUA_Achr6P24860_001	Banana	nucleus	27.04	30.1
GSMUA_Achr4P28440_001	Banana	cytosol	16.67	29.32
GSMUA_AchrUn_...	Banana	cytosol, nucleus	12.59	29.06
GSMUA_Achr7P01520_001	Banana	nucleus	25.37	28.07
GSMUA_Achr10P...	Banana	nucleus	24.81	25.82
CDX86307	Canola	nucleus	53.89	19.49
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	53.52	17.87
Bra037488.1-P	Field mustard	cytosol	0.19	0.11

Protein Annotations

EnsemblPlants:GSMUA_Achr8P29000_001	EnsemblPlants:GSMUA_Achr8T29000_001	EnsemblPlantsGene:GSMUA_Achr8G29000_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	SEG:seg	UniParc:UPI000296585E	UniProt:M0TUK3
MapMan:35.1	:	:	:	:	:

Description

frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G29000_001]

Coordinates

chr8:+:31574313..31580130

Molecular Weight (calculated)

60528.2 Da

IEP (calculated)

6.093

GRAVY (calculated)

-0.466

Length

540 amino acids

Sequence
(BLAST)

001: MADTRSVVTL IDSTTSKLQQ LQQAFSELES HSAISLNLKW KELEEHFHGL EKSLKKRFDE LEDQEKKYVT KVTEAQEMLE KQEAAVVSKE LASLERLQEQ
101: RDAVLSALFV KYRTSSPELV AAGVSNGMAD PILRENLDDT AAKSGSEYVC PIEDENTCTK PPSELIKLCE EMDAEGLHKF ISDNRKNLSS IREEIPVALR
201: SAPSPFSLVL DSLKGFYAGE VLGLNGKKDG SLLGLRRTCL MLMESLEQLL ANGVPDSLSD EQILTPDTKE KAKVVAKEWK PKLDHLDTEA SSGNSLEAHA
301: FLQLLATFDI VSEFDQDEIC KLIPAVTRRR QTVELCRSLG LSHKMPGLIE VLLNSGRQVE VVNLAYAFKL TEQFAPVPLL KSYLKEAKKV PQVKAGSMSP
401: GAQNEMNERE LSALKAVIKC IEEHKLEDQY PVDPLQNRIL QLEKAKADKR RAAEAARPQS KRPRASGSLY APRVTSMPDK SFYHAPPERY LYPYDRQYVY
501: AAEAHHPPLV NSAPYTTISP THTTYYGNGY QVQYQTAYLH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.