Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 15.37 | 46.48 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 48.19 | 43.93 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 40.18 | 38.44 |
| KRH47571 | Soybean | nucleus | 37.98 | 34.07 |
| KRH06147 | Soybean | nucleus | 37.34 | 33.6 |
| Solyc12g049230.1.1 | Tomato | nucleus | 34.24 | 33.59 |
| Zm00001d044979_P010 | Maize | nucleus | 34.37 | 31.22 |
| AT3G13990.1 | Thale cress | nucleus | 33.72 | 30.78 |
| EER88029 | Sorghum | nucleus | 33.98 | 30.62 |
| Os06t0206100-01 | Rice | nucleus | 33.72 | 30.56 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 34.11 | 30.38 |
| Zm00001d037122_P009 | Maize | nucleus | 33.72 | 30.35 |
| CDY65326 | Canola | nucleus | 33.33 | 30.32 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 33.72 | 30.14 |
| CDX97535 | Canola | nucleus | 33.59 | 30.13 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 33.07 | 29.7 |
| Bra021524.1-P | Field mustard | nucleus | 33.33 | 29.62 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 33.85 | 29.57 |
| CDY39087 | Canola | nucleus | 33.33 | 29.55 |
| CDY33258 | Canola | nucleus | 32.82 | 29.16 |
| Bra027380.1-P | Field mustard | nucleus | 33.98 | 29.16 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 23.51 | 20.75 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 22.48 | 20.74 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 16.15 | 19.47 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 21.32 | 19.14 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 1.94 | 16.85 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 14.86 | 13.55 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 14.08 | 13.05 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 14.47 | 12.76 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 14.99 | 12.75 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P20190_001 | EnsemblPlants:GSMUA_Achr3T20190_001 | EnsemblPlantsGene:GSMUA_Achr3G20190_001 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | SEG:seg |
| UniParc:UPI00029696E8 | UniProt:M0SG85 | MapMan:35.2 | : | : | : |
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G20190_001]
Coordinates
chr3:+:21400593..21406929
Molecular Weight (calculated)
84601.6 Da
IEP (calculated)
7.179
GRAVY (calculated)
-0.509
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHLYLADPF HEVKRRDRKK EHTGYRGFAD TRKQVEQNIP SGKLYRLWNQ NSHRGGFTRN LVPDAGISHE FRIVRDNRVS QNVNKDALQE ENKQLVPGNE
101: QTMPDVPEKS STRVPSDQKH SVSANSDECL ISAYFDESSH VPDYNETQTS GLPNSFIGMS SSSSDPVHVP YLDSASAGKV GAIQHEVGVV GFRRQTSDHP
201: ENRSSVSNSF LSSSLSGKNI CFSVESTGHQ AYTSKSHSLN QISPSAADLY STSLSIQSQG FYHNSRLHQQ SLSQQKAIQP IMKWKPKTRP KPNIVNNGVP
301: GITSASPSCA VSSCVSRPVG KTRSEKLSQD CSLDSQHVII PQHLLVPQSE CMQLIFGSFG TGFDTSKGFA SVPHQSGSAE HILIRILKFA GSMFAPVPVE
401: NVISAVCRDS LHDQSSTSPC GSSVSAAESQ EPPPENNGCL SPQTIQTYDD IRLVESNSPP FNTQEEQQLQ NPHSLPSFSA YDNQSSYDVP FFKTVMQDNV
501: HAQGSTSSSE VLVDLIFFSS LAMAQQQQLV QQQQPIVQLY PQIHMPHFPN FVPYRHIISP VYVPQMAMPN YASNTGYPHP STVNSYVLMP GGSPHMLASK
601: CATTQYRPIA AGNPTGCGTY TNPASFAISF PGAVSNTTSQ EDLNSVKYKD NNVFVPNPQL DTSDNWILTS RELPNLQSAP YYSLSGQALQ SAFLPAHADH
701: AVFNATRNTS HVQYPGLYPQ PQPTSMVNSH HLLQQQVPPA IGGSLGLGIA SPGPQVGGNR QQTQLGHLNW AAKF
101: QTMPDVPEKS STRVPSDQKH SVSANSDECL ISAYFDESSH VPDYNETQTS GLPNSFIGMS SSSSDPVHVP YLDSASAGKV GAIQHEVGVV GFRRQTSDHP
201: ENRSSVSNSF LSSSLSGKNI CFSVESTGHQ AYTSKSHSLN QISPSAADLY STSLSIQSQG FYHNSRLHQQ SLSQQKAIQP IMKWKPKTRP KPNIVNNGVP
301: GITSASPSCA VSSCVSRPVG KTRSEKLSQD CSLDSQHVII PQHLLVPQSE CMQLIFGSFG TGFDTSKGFA SVPHQSGSAE HILIRILKFA GSMFAPVPVE
401: NVISAVCRDS LHDQSSTSPC GSSVSAAESQ EPPPENNGCL SPQTIQTYDD IRLVESNSPP FNTQEEQQLQ NPHSLPSFSA YDNQSSYDVP FFKTVMQDNV
501: HAQGSTSSSE VLVDLIFFSS LAMAQQQQLV QQQQPIVQLY PQIHMPHFPN FVPYRHIISP VYVPQMAMPN YASNTGYPHP STVNSYVLMP GGSPHMLASK
601: CATTQYRPIA AGNPTGCGTY TNPASFAISF PGAVSNTTSQ EDLNSVKYKD NNVFVPNPQL DTSDNWILTS RELPNLQSAP YYSLSGQALQ SAFLPAHADH
701: AVFNATRNTS HVQYPGLYPQ PQPTSMVNSH HLLQQQVPPA IGGSLGLGIA SPGPQVGGNR QQTQLGHLNW AAKF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.