Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d044979_P010 | Maize | nucleus | 92.08 | 92.84 |
| Zm00001d037122_P009 | Maize | nucleus | 91.04 | 90.93 |
| Os06t0206100-01 | Rice | nucleus | 71.01 | 71.43 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 70.55 | 69.98 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 69.5 | 69.26 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 69.5 | 68.7 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 70.66 | 68.51 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 14.44 | 48.44 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 38.3 | 40.67 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 39.0 | 39.46 |
| Solyc12g049230.1.1 | Tomato | nucleus | 34.58 | 37.64 |
| KRH47571 | Soybean | nucleus | 37.49 | 37.31 |
| KRH06147 | Soybean | nucleus | 36.9 | 36.86 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 30.62 | 33.98 |
| AT3G13990.1 | Thale cress | nucleus | 32.36 | 32.78 |
| CDY65326 | Canola | nucleus | 31.32 | 31.61 |
| CDX97535 | Canola | nucleus | 31.43 | 31.29 |
| CDY33258 | Canola | nucleus | 31.08 | 30.65 |
| Bra021524.1-P | Field mustard | nucleus | 30.73 | 30.31 |
| Bra027380.1-P | Field mustard | nucleus | 31.43 | 29.93 |
| CDY39087 | Canola | nucleus | 30.27 | 29.78 |
| KXG39164 | Sorghum | nucleus | 25.26 | 27.68 |
| KXG24955 | Sorghum | nucleus | 21.07 | 22.26 |
| KXG33052 | Sorghum | nucleus | 17.0 | 17.74 |
| KXG22544 | Sorghum | nucleus | 17.11 | 17.17 |
| KXG22612 | Sorghum | nucleus | 14.44 | 14.9 |
Protein Annotations
| EnsemblPlants:EER88029 | EnsemblPlantsGene:SORBI_3010G077500 | EntrezGene:8077326 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 | ProteinID:EER88029 |
| ProteinID:EER88029.1 | RefSeq:XP_002436662.1 | SEG:seg | SUPFAM:SSF46934 | unigene:Sbi.3278 | UniParc:UPI0001A89281 |
| UniProt:C5Z6C7 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:6455308..6463778
Molecular Weight (calculated)
92737.6 Da
IEP (calculated)
6.843
GRAVY (calculated)
-0.853
Length
859 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGGGAG ARGSDRAGAG AARSPTTTAA IQTTIQSIKE VVGGHSDADI LDTLRESNMD PNETAQKLLN QDPFHEVKRK RDKKKESAGQ KSFADSTAQV
101: EQSSQWMKPH TQRMENDQRR TPNQGQNSGP SREFRVVRDN RFQHGVVENR PELGHKGSAN VQMSDRSTVV QSGRNRSPAT TSDGQITHQN AMQNSHSDTT
201: QGKRDGQGTT QKHAKPYLKN SQNEQHFPGS DPAHGSANVR IAGGTVGPAR RHVGVINSTR QFTGRSGSQM HAPSGSSHAN IQRGSFTSVG ASGRYSPFMS
301: RNIQQNQRPD TIFRGRPTGR SFVAQNVNRY HQGPTSNQKV HPIKEWKPKS TKKAPTTDAD NNIADAASPS ASNGENANAP DVNRLSEKLS QANLHEVEHV
401: IIPEHLRVPE YEQTKLRFGS FTSGLESEQV PASTPQDTEQ PEHLQESVQQ VSEDDSLDAG HDDMDEQARS SQHLSTSTAE ISLPPSEDSD RMSGQVENDD
501: GLGLVQSDTP VGAADGDSTQ ITSTLTPFSA YGHEDPNMHT TNEAQLYGLV EPNVHPQVLA SSSQGYPSEN PEADNAVQVF RMPEPNVHSQ VLPSTSEALN
601: PQIVSNSPVP ISSQQQQQHI SQQQAAAQMY PQMHVQHFPN FMPYRQLYSP VYPMPMPNYS PNVPYPSNGN NYLQMPSGGS HLTAGGVKYG VSQYKPVPSG
701: NPSGYGNYTH PAGFTMGSPG VIGAAVGVDD VNRMKYKDNI YASTPQVETS DIWIQSAREM PPLQVPSYYN IPGQATAGAF VPNPANASFN ATAQSSHAQF
801: PGLYHPQQPP SIVSPHPMVH QQVPSAIGPN VGVGVAAPGP QVGAYQQPQL GHMNWRPSF
101: EQSSQWMKPH TQRMENDQRR TPNQGQNSGP SREFRVVRDN RFQHGVVENR PELGHKGSAN VQMSDRSTVV QSGRNRSPAT TSDGQITHQN AMQNSHSDTT
201: QGKRDGQGTT QKHAKPYLKN SQNEQHFPGS DPAHGSANVR IAGGTVGPAR RHVGVINSTR QFTGRSGSQM HAPSGSSHAN IQRGSFTSVG ASGRYSPFMS
301: RNIQQNQRPD TIFRGRPTGR SFVAQNVNRY HQGPTSNQKV HPIKEWKPKS TKKAPTTDAD NNIADAASPS ASNGENANAP DVNRLSEKLS QANLHEVEHV
401: IIPEHLRVPE YEQTKLRFGS FTSGLESEQV PASTPQDTEQ PEHLQESVQQ VSEDDSLDAG HDDMDEQARS SQHLSTSTAE ISLPPSEDSD RMSGQVENDD
501: GLGLVQSDTP VGAADGDSTQ ITSTLTPFSA YGHEDPNMHT TNEAQLYGLV EPNVHPQVLA SSSQGYPSEN PEADNAVQVF RMPEPNVHSQ VLPSTSEALN
601: PQIVSNSPVP ISSQQQQQHI SQQQAAAQMY PQMHVQHFPN FMPYRQLYSP VYPMPMPNYS PNVPYPSNGN NYLQMPSGGS HLTAGGVKYG VSQYKPVPSG
701: NPSGYGNYTH PAGFTMGSPG VIGAAVGVDD VNRMKYKDNI YASTPQVETS DIWIQSAREM PPLQVPSYYN IPGQATAGAF VPNPANASFN ATAQSSHAQF
801: PGLYHPQQPP SIVSPHPMVH QQVPSAIGPN VGVGVAAPGP QVGAYQQPQL GHMNWRPSF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.