Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88029 | Sorghum | nucleus | 92.84 | 92.08 |
| Zm00001d037122_P009 | Maize | nucleus | 89.91 | 89.07 |
| Os06t0206100-01 | Rice | nucleus | 70.19 | 70.02 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 69.6 | 68.48 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 69.01 | 68.21 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 68.43 | 67.09 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 69.37 | 66.7 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 14.2 | 47.27 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 37.44 | 39.43 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 39.08 | 39.22 |
| Solyc12g049230.1.1 | Tomato | nucleus | 34.51 | 37.26 |
| KRH47571 | Soybean | nucleus | 36.85 | 36.38 |
| KRH06147 | Soybean | nucleus | 36.27 | 35.93 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 31.22 | 34.37 |
| AT3G13990.1 | Thale cress | nucleus | 31.57 | 31.72 |
| CDY65326 | Canola | nucleus | 30.99 | 31.02 |
| CDX97535 | Canola | nucleus | 31.22 | 30.82 |
| CDY33258 | Canola | nucleus | 30.63 | 29.97 |
| Bra021524.1-P | Field mustard | nucleus | 30.28 | 29.62 |
| Bra027380.1-P | Field mustard | nucleus | 31.22 | 29.49 |
| CDY39087 | Canola | nucleus | 29.93 | 29.21 |
| Zm00001d029487_P001 | Maize | nucleus | 24.3 | 28.05 |
| Zm00001d035703_P001 | Maize | nucleus | 7.28 | 22.96 |
| Zm00001d017358_P001 | Maize | nucleus | 2.82 | 21.82 |
| Zm00001d050112_P011 | Maize | nucleus | 20.19 | 20.31 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 3.17 | 17.65 |
| Zm00001d043962_P001 | Maize | nucleus | 16.55 | 16.75 |
| Zm00001d009591_P006 | Maize | nucleus | 16.67 | 16.57 |
| Zm00001d011517_P002 | Maize | nucleus | 16.31 | 16.55 |
| Zm00001d039041_P007 | Maize | nucleus | 16.43 | 15.52 |
| Zm00001d004950_P001 | Maize | nucleus | 5.4 | 14.84 |
| Zm00001d039138_P012 | Maize | nucleus | 13.85 | 14.23 |
| Zm00001d009683_P004 | Maize | nucleus | 13.38 | 13.4 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 2.82 | 10.71 |
| Zm00001d050118_P001 | Maize | mitochondrion | 3.99 | 8.1 |
Protein Annotations
| EnsemblPlants:Zm00001d044979_P010 | EnsemblPlants:Zm00001d044979_T010 | EnsemblPlantsGene:Zm00001d044979 | EntrezGene:100501220 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 |
| ProteinID:AQL01226.1 | ProteinID:AQL01228.1 | SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0002220AB5 | UniProt:K7V9H3 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative DUF1296 domain containing family protein
Coordinates
chr9:+:9105433..9115484
Molecular Weight (calculated)
92523.6 Da
IEP (calculated)
6.672
GRAVY (calculated)
-0.823
Length
852 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGGARG SDRAGAARSP TTTTAIQSTI QSIKEVVVGH SDADILDTLR ESNMDPNETA QKLLNQDPFH EVKRKRDKKK ESAGQKSFAD STAQVEQNSQ
101: WMKPHTQKME NDQRTPKQGQ MSGPTREFRV VRDNRFQHGV VENRPELGHK GSANVQMSDR STLVQSGRNR SPATTSGDQI THQNAMQNSN SDTTQGKRDA
201: QGTTEKHVKP YLKNPQNEQH FPGSDPAHGS ANVRIAGGTV GPAQRHVGVV NSTRQFAARS GSQMHAPSGS YANIQRGSFT SVGASGRYSA FMSRNIQQNQ
301: RPDTMFRGRP TVRSFVAQNT NRYHQGSTSN QKAVHPIKEW KPKSTKKSPT IDADNSIADA TSPSASNCES ANTLNVNELP EKISQTNLHE VEHVIIPEHL
401: RVPEYEQTKL RFGSFTSGLD SEQVSASTPQ DTEQPEHVQE SVQQASEYDS LDAGPDDMDE QARSSQHLST STAEISLPPS EDSDRMSGQV ENDDGLGLVQ
501: SDTPIGAADG DNTQITSTLT AFSAYSHEDP NMHTNNEAQL YGLVEPNVHP QVLASSSQGY PSENPEADNA VQVFRMPESN VHSQVLPSTS EALNPQIVSN
601: SPVSISSQQQ QHISQQQAAA QMYPQMHVQH FPNFMPYRQL YSPVYPMPMP NYSPNVPYPS NGNNYLQMPS GGSHLTAGSV KYGVSQFKPL PSGNPSGYGN
701: YTHPAGFTMG SPGVIGATVG VDDVNRMKYK DNIYASTPQV ETSDIWIQQA REMPPMQVPS YYNIPGQATP GAFVPNPANA SFNATAQSSH VQFPGLYHPQ
801: QPPSIVSPHP MVHQQVPSAI GPNVGVGVAA PGPQVGAYQQ PQLGHMNWRP SF
101: WMKPHTQKME NDQRTPKQGQ MSGPTREFRV VRDNRFQHGV VENRPELGHK GSANVQMSDR STLVQSGRNR SPATTSGDQI THQNAMQNSN SDTTQGKRDA
201: QGTTEKHVKP YLKNPQNEQH FPGSDPAHGS ANVRIAGGTV GPAQRHVGVV NSTRQFAARS GSQMHAPSGS YANIQRGSFT SVGASGRYSA FMSRNIQQNQ
301: RPDTMFRGRP TVRSFVAQNT NRYHQGSTSN QKAVHPIKEW KPKSTKKSPT IDADNSIADA TSPSASNCES ANTLNVNELP EKISQTNLHE VEHVIIPEHL
401: RVPEYEQTKL RFGSFTSGLD SEQVSASTPQ DTEQPEHVQE SVQQASEYDS LDAGPDDMDE QARSSQHLST STAEISLPPS EDSDRMSGQV ENDDGLGLVQ
501: SDTPIGAADG DNTQITSTLT AFSAYSHEDP NMHTNNEAQL YGLVEPNVHP QVLASSSQGY PSENPEADNA VQVFRMPESN VHSQVLPSTS EALNPQIVSN
601: SPVSISSQQQ QHISQQQAAA QMYPQMHVQH FPNFMPYRQL YSPVYPMPMP NYSPNVPYPS NGNNYLQMPS GGSHLTAGSV KYGVSQFKPL PSGNPSGYGN
701: YTHPAGFTMG SPGVIGATVG VDDVNRMKYK DNIYASTPQV ETSDIWIQQA REMPPMQVPS YYNIPGQATP GAFVPNPANA SFNATAQSSH VQFPGLYHPQ
801: QPPSIVSPHP MVHQQVPSAI GPNVGVGVAA PGPQVGAYQQ PQLGHMNWRP SF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.