Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G071400.2 | Wheat | nucleus | 96.19 | 95.86 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 97.46 | 95.26 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 91.22 | 91.65 |
| EER88029 | Sorghum | nucleus | 69.98 | 70.55 |
| Zm00001d044979_P010 | Maize | nucleus | 68.48 | 69.6 |
| Os06t0206100-01 | Rice | nucleus | 68.59 | 69.56 |
| Zm00001d037122_P009 | Maize | nucleus | 67.9 | 68.37 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 14.78 | 50.0 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 37.76 | 40.42 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 37.64 | 38.4 |
| Solyc12g049230.1.1 | Tomato | nucleus | 34.53 | 37.9 |
| KRH47571 | Soybean | nucleus | 36.95 | 37.08 |
| KRH06147 | Soybean | nucleus | 36.72 | 36.98 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 30.14 | 33.72 |
| AT3G13990.1 | Thale cress | nucleus | 31.29 | 31.96 |
| CDX97535 | Canola | nucleus | 30.72 | 30.82 |
| CDY65326 | Canola | nucleus | 30.25 | 30.79 |
| CDY33258 | Canola | nucleus | 30.72 | 30.54 |
| Bra021524.1-P | Field mustard | nucleus | 30.6 | 30.42 |
| CDY39087 | Canola | nucleus | 30.48 | 30.24 |
| Bra027380.1-P | Field mustard | nucleus | 30.6 | 29.38 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 22.4 | 23.54 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 15.47 | 15.9 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 15.36 | 15.29 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 14.32 | 14.55 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G167400.1 | EnsemblPlantsGene:TraesCS7D01G167400 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 |
| PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7D:+:117754684..117762718
Molecular Weight (calculated)
94840.6 Da
IEP (calculated)
6.594
GRAVY (calculated)
-0.925
Length
866 amino acids
Sequence
(BLAST)
(BLAST)
001: SSDSKAVRSP NPAIDSTIKS IKEVVGGHSE DDIYDALRES NMDPNETAQR LLNQDPFHEV KRKRDKKRES AGQKNPSETT AQGEHGTQQT KPHTQRVEID
101: QRRAYNHGQT YGPSREFRVV RDNRHGAVEN GAEQHKVSAY MQSSDRSGVV VQSDRNRPPP TTSEGQITHQ SAKSSYNSDM HQMKRDAQGT AQRHARPYLK
201: NSQNEHQYPN SDLHHASSNY KAAGGFVRAN RREAGVANAP RQYSGRPGSQ FHGPNDSYHA NIQRGNFASA GPSVRRPSFM PRNTQPNHRP VVDTVTRGRS
301: VGRPFGNQNN SRYHQGPASN QKVIQPAKEW KPKSTNKSCT NDADNSGTNA TSPLDSKAEN ANVLDVNSLC DKSSHANVHE MEHVIIPEHL RVPEYEQTRL
401: RFGSFTPGFD SPEHEQTRIR FGSFSPGFDS DQLPTSTSPE PEQPEHVQES VQLVVQEDEF DTEHDEVDEQ VGSQLTTIST SAAESSLPPS EDSVQMNGQE
501: VDDDDGLGLV QSDTPLGAAD DHNIQSTSGL TAFSAYGHED PNMHPNNEAQ LYGLVEPNVH QQVLASSSQG YTSVNPGADN AVQVFRMPES NVHSQVLPSA
601: SEALSSQLAS SSPIAMSTQQ QHMSQQQQAA QMYPPMHVQH YPNFMPYRHP LYSPVYVPPM AMPNYSANVP YPANGNNYLQ MAGGGSHLTA GQVKYGVSQY
701: KPVPAGNPSG YGNYTHPAGY TISSPGVIGA GVGVDDVNRM KYKDNNIYAP TPQVETSDIW IQNREIPTLQ CPPYYNLSGQ ATPGAYMPNP GNASFSATAQ
801: SSHAQFPGMY HPQQPPSIVS PHPMVHQQVP SAIGPNVGVG VAAPGPQVGA YQQQQLGHMN WRQPNF
101: QRRAYNHGQT YGPSREFRVV RDNRHGAVEN GAEQHKVSAY MQSSDRSGVV VQSDRNRPPP TTSEGQITHQ SAKSSYNSDM HQMKRDAQGT AQRHARPYLK
201: NSQNEHQYPN SDLHHASSNY KAAGGFVRAN RREAGVANAP RQYSGRPGSQ FHGPNDSYHA NIQRGNFASA GPSVRRPSFM PRNTQPNHRP VVDTVTRGRS
301: VGRPFGNQNN SRYHQGPASN QKVIQPAKEW KPKSTNKSCT NDADNSGTNA TSPLDSKAEN ANVLDVNSLC DKSSHANVHE MEHVIIPEHL RVPEYEQTRL
401: RFGSFTPGFD SPEHEQTRIR FGSFSPGFDS DQLPTSTSPE PEQPEHVQES VQLVVQEDEF DTEHDEVDEQ VGSQLTTIST SAAESSLPPS EDSVQMNGQE
501: VDDDDGLGLV QSDTPLGAAD DHNIQSTSGL TAFSAYGHED PNMHPNNEAQ LYGLVEPNVH QQVLASSSQG YTSVNPGADN AVQVFRMPES NVHSQVLPSA
601: SEALSSQLAS SSPIAMSTQQ QHMSQQQQAA QMYPPMHVQH YPNFMPYRHP LYSPVYVPPM AMPNYSANVP YPANGNNYLQ MAGGGSHLTA GQVKYGVSQY
701: KPVPAGNPSG YGNYTHPAGY TISSPGVIGA GVGVDDVNRM KYKDNNIYAP TPQVETSDIW IQNREIPTLQ CPPYYNLSGQ ATPGAYMPNP GNASFSATAQ
801: SSHAQFPGMY HPQQPPSIVS PHPMVHQQVP SAIGPNVGVG VAAPGPQVGA YQQQQLGHMN WRQPNF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.