Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97535 | Canola | nucleus | 93.02 | 97.22 |
| CDY65326 | Canola | nucleus | 91.57 | 97.06 |
| Bra021524.1-P | Field mustard | nucleus | 76.27 | 78.99 |
| AT3G13990.1 | Thale cress | nucleus | 72.84 | 77.48 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 16.08 | 56.64 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 47.01 | 52.41 |
| KRH47571 | Soybean | nucleus | 47.34 | 49.48 |
| KRH06147 | Soybean | nucleus | 46.34 | 48.6 |
| Solyc12g049230.1.1 | Tomato | nucleus | 40.35 | 46.13 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 35.92 | 38.16 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 29.16 | 33.98 |
| EER88029 | Sorghum | nucleus | 29.93 | 31.43 |
| Zm00001d044979_P010 | Maize | nucleus | 29.49 | 31.22 |
| Os06t0206100-01 | Rice | nucleus | 29.38 | 31.03 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 29.38 | 30.6 |
| Zm00001d037122_P009 | Maize | nucleus | 28.82 | 30.23 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 28.82 | 29.92 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 28.49 | 29.81 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 29.16 | 29.68 |
| Os03t0411000-01 | Rice | nucleus | 25.06 | 29.31 |
| KXG39164 | Sorghum | nucleus | 24.72 | 28.44 |
| Zm00001d029487_P001 | Maize | nucleus | 22.73 | 27.78 |
| Bra040021.1-P | Field mustard | nucleus | 18.4 | 20.19 |
| Bra029667.1-P | Field mustard | nucleus | 18.07 | 19.73 |
| Bra039379.1-P | Field mustard | nucleus | 8.43 | 19.39 |
| Bra022970.1-P | Field mustard | nucleus | 15.85 | 17.68 |
| Bra021900.1-P | Field mustard | nucleus | 15.85 | 17.42 |
| Bra010832.1-P | Field mustard | nucleus | 15.63 | 17.15 |
| Bra013287.1-P | Field mustard | nucleus | 14.63 | 16.92 |
| Bra038015.1-P | Field mustard | nucleus | 11.31 | 16.75 |
| Bra030134.1-P | Field mustard | nucleus | 14.41 | 16.62 |
| Bra021022.1-P | Field mustard | nucleus | 11.09 | 16.1 |
| Bra032310.1-P | Field mustard | nucleus | 14.52 | 15.25 |
Protein Annotations
| EnsemblPlants:Bra027380.1 | EnsemblPlants:Bra027380.1-P | EnsemblPlantsGene:Bra027380 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI0002547EBB | UniProt:M4EF18 | MapMan:35.2 | : | : |
Description
AT3G13990 (E=1e-257) | unknown protein
Coordinates
chrA05:+:20614552..20619114
Molecular Weight (calculated)
98456.1 Da
IEP (calculated)
8.694
GRAVY (calculated)
-0.892
Length
902 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSRTGGN RAMDDGDRKL IESIREIVGN HTDADIYAAL KEADMNADEA VQKLIHQDPF HVVKRRRDRK KEVAVLVEPA DEKKPLESVT SEVNVRTQPE
101: HNARRGGYSR NVFPRNAAPR DDFHRNTAPR NELPRNAAPR NEFPRNAAQQ HEFPGNPAPR NAFLRNAAPR NAFPRNPATG SKKEFRVVRD NRSNPNVGEE
201: LKYTSAHQSS GLNISKVMAS QNQKGLTGGV GNRRSPGDQD FSKDCNAVAD VRLRDSEIAP LHHPTRKELS DGKQTARSVT LPSTNSVIGV YPSSTDPVHV
301: PSPVSRSSPV GAIKREVRGG GFGGKPSENV GKNPSASAGS LSGSSIRKIG TPNAHRSSSP NSKIDQVSQT TLRESVLPSG GEKNRPVLNR QRGNRGSQNA
401: RTQQVGGHTK GVSQNKEWKP KPIQKSVGHN PGVIGTPAKS QACRSDDISL NLESEAVKVQ DKLSHVHISE SQNVIIADHI RVPETDRCQL TFGSFVQEFS
501: SSVNSEPAFQ ESCSLEELRE TDRSSPVSSP ETLTDGPGDK PIDILDDHVR VSESDSRVSV ASEHQLPEEK EAHRSDNLDE YSEIQLLNRN GPHYTPLEFE
601: EQQDPPELQK APAYGNHGSY DSPYENVRGQ GLPSQQEVLS TQMVNNGPSS TIPMLQQQQQ QQQQASMQQM YPQVQVAHFP NLMPYRQFVS YVPQMPMPGY
701: SGNPAGYAHP SNGNSYVLMP GGGSHPGSNG VKYGIQQFKP VPTGGPTGFG TYNNNPNAYQ INTPNVVGNA MGLEDPSRMK YKDGNIYVQN PRQQPETSDI
801: WMQNPRDLSS LQSPPYYNVA GQTPHGAYLP SHTSHPSFNA AAQSPQMQFQ GLFHPPQPGA MANQHHMGPG LGGNVGVVPS PPSQLGAYQQ SQLGHPNWGA
901: NF
101: HNARRGGYSR NVFPRNAAPR DDFHRNTAPR NELPRNAAPR NEFPRNAAQQ HEFPGNPAPR NAFLRNAAPR NAFPRNPATG SKKEFRVVRD NRSNPNVGEE
201: LKYTSAHQSS GLNISKVMAS QNQKGLTGGV GNRRSPGDQD FSKDCNAVAD VRLRDSEIAP LHHPTRKELS DGKQTARSVT LPSTNSVIGV YPSSTDPVHV
301: PSPVSRSSPV GAIKREVRGG GFGGKPSENV GKNPSASAGS LSGSSIRKIG TPNAHRSSSP NSKIDQVSQT TLRESVLPSG GEKNRPVLNR QRGNRGSQNA
401: RTQQVGGHTK GVSQNKEWKP KPIQKSVGHN PGVIGTPAKS QACRSDDISL NLESEAVKVQ DKLSHVHISE SQNVIIADHI RVPETDRCQL TFGSFVQEFS
501: SSVNSEPAFQ ESCSLEELRE TDRSSPVSSP ETLTDGPGDK PIDILDDHVR VSESDSRVSV ASEHQLPEEK EAHRSDNLDE YSEIQLLNRN GPHYTPLEFE
601: EQQDPPELQK APAYGNHGSY DSPYENVRGQ GLPSQQEVLS TQMVNNGPSS TIPMLQQQQQ QQQQASMQQM YPQVQVAHFP NLMPYRQFVS YVPQMPMPGY
701: SGNPAGYAHP SNGNSYVLMP GGGSHPGSNG VKYGIQQFKP VPTGGPTGFG TYNNNPNAYQ INTPNVVGNA MGLEDPSRMK YKDGNIYVQN PRQQPETSDI
801: WMQNPRDLSS LQSPPYYNVA GQTPHGAYLP SHTSHPSFNA AAQSPQMQFQ GLFHPPQPGA MANQHHMGPG LGGNVGVVPS PPSQLGAYQQ SQLGHPNWGA
901: NF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.