Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72379 | Canola | cytosol, nucleus, plastid | 21.35 | 98.48 |
| CDY53767 | Canola | nucleus | 92.28 | 91.38 |
| CDY53764 | Canola | extracellular, vacuole | 62.4 | 87.56 |
| AT1G55820.1 | Thale cress | nucleus | 62.56 | 66.26 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 6.24 | 42.7 |
| Os09t0261400-01 | Rice | plasma membrane | 4.6 | 35.0 |
| Bra039379.1-P | Field mustard | nucleus | 21.02 | 32.65 |
| Bra040021.1-P | Field mustard | nucleus | 24.96 | 18.49 |
| Bra029667.1-P | Field mustard | nucleus | 24.14 | 17.8 |
| Bra021022.1-P | Field mustard | nucleus | 13.63 | 13.37 |
| Bra013287.1-P | Field mustard | nucleus | 16.42 | 12.82 |
| Bra022970.1-P | Field mustard | nucleus | 16.91 | 12.73 |
| Bra021900.1-P | Field mustard | nucleus | 16.75 | 12.42 |
| Bra030134.1-P | Field mustard | nucleus | 15.93 | 12.4 |
| Bra010832.1-P | Field mustard | nucleus | 16.26 | 12.04 |
| Bra032310.1-P | Field mustard | nucleus | 16.09 | 11.41 |
| Bra027380.1-P | Field mustard | nucleus | 16.75 | 11.31 |
| Bra021524.1-P | Field mustard | nucleus | 16.09 | 11.25 |
Protein Annotations
| EnsemblPlants:Bra038015.1 | EnsemblPlants:Bra038015.1-P | EnsemblPlantsGene:Bra038015 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:GIP1 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF30 | PFAM:PF06972 | SEG:seg |
| UniParc:UPI000253EE24 | UniProt:M4FAA1 | MapMan:35.1 | : | : | : |
Description
AT1G55820 (E=1e-082) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: GIP1 (GBF-INTERACTING PROTEIN 1); unfolded protein binding (TAIR:AT3G13222.1); Has 1009 Blast hits to 462 proteins in 111 species: Archae - 0; Bacteria - 42; Metazoa - 245; Fungi - 90; Plants - 135; Viruses - 12; Other Eukaryotes - 485 (source: NCBI BLink).
Coordinates
chrA06:-:111800..114987
Molecular Weight (calculated)
64933.9 Da
IEP (calculated)
6.621
GRAVY (calculated)
-0.579
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKSLGDGGS ARVSIPRNLR ETVQSIREMT GKQHSDEDIY AVYKESFNDP FETAQKLRFL DTFHENLVPI NQASARTGRR NFASSNTYHG NGRSSSFKRE
101: SGSNHVTGGS RPSLPNTNNR ARNPTLPRAT KVPAPSGVSN HKVEDDFTAT VNKGVAEKLP LSKSISFSED AVEPETSKAN SEQVAPPVSV SVVQNHTQDV
201: ISAQPDVNNQ PAELQSSTFG RQDPSLISAS HCSNHSDQVT GNETASKKGK ARSLLKLDVG ERSHVTFPLH LQVADELQNG LTFGSFDSNF VKELSSSTYG
301: ASGGDDSDFK SSHGTGDDER DSSPTTNGIH AVASARGASS YFEDDNGIPN SAPGALPNTQ PHQIAYGQDA PFSVFGLVPS FSALGQPLGN SNAPAMSLVS
401: NPPGQSSIAA VSQQATHLFG QQYPPSFFPY GPYYPQFYMP PPYIHQFLGP NGIPQQFYFP PGAAIAAPTH IAPVGDNENP PTTNPSQHAS STVATHIPSA
501: TALNSIHSEE RTSAMTGNAG AWIGQGLGNL QMNPMYNLAL QGQPLGFPVV QAGHRGLMGI HQPSQPMPAP SITYQTLTPL PPTTAMAEPI RHPNIAHQQP
601: QAAVTNNNY
101: SGSNHVTGGS RPSLPNTNNR ARNPTLPRAT KVPAPSGVSN HKVEDDFTAT VNKGVAEKLP LSKSISFSED AVEPETSKAN SEQVAPPVSV SVVQNHTQDV
201: ISAQPDVNNQ PAELQSSTFG RQDPSLISAS HCSNHSDQVT GNETASKKGK ARSLLKLDVG ERSHVTFPLH LQVADELQNG LTFGSFDSNF VKELSSSTYG
301: ASGGDDSDFK SSHGTGDDER DSSPTTNGIH AVASARGASS YFEDDNGIPN SAPGALPNTQ PHQIAYGQDA PFSVFGLVPS FSALGQPLGN SNAPAMSLVS
401: NPPGQSSIAA VSQQATHLFG QQYPPSFFPY GPYYPQFYMP PPYIHQFLGP NGIPQQFYFP PGAAIAAPTH IAPVGDNENP PTTNPSQHAS STVATHIPSA
501: TALNSIHSEE RTSAMTGNAG AWIGQGLGNL QMNPMYNLAL QGQPLGFPVV QAGHRGLMGI HQPSQPMPAP SITYQTLTPL PPTTAMAEPI RHPNIAHQQP
601: QAAVTNNNY
001: MSSSDGGSSR VSIPYHLRKT LQKIREYTGK QHSDEDIFAV YKDSFNDPHE TAQKLLFLDT FHEVRSKREK KKEPIVPVTQ PSGRGGRRNF ASSNSYQGSG
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
Arabidopsis Description
GIP1LGBF-interacting protein 1-like [Source:UniProtKB/Swiss-Prot;Acc:A4FVR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.