Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35953 | Canola | nucleus | 94.07 | 95.34 |
| CDY28028 | Canola | nucleus | 90.44 | 92.45 |
| Bra040021.1-P | Field mustard | nucleus | 80.63 | 81.02 |
| AT3G07660.1 | Thale cress | nucleus | 80.02 | 78.6 |
| KRH16977 | Soybean | nucleus | 50.0 | 47.04 |
| KRH72609 | Soybean | nucleus | 49.52 | 46.27 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 49.88 | 45.98 |
| Solyc07g045230.2.1 | Tomato | nucleus | 44.92 | 42.35 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 42.49 | 41.84 |
| Solyc05g018750.2.1 | Tomato | nucleus | 39.35 | 39.83 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 42.01 | 39.57 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 40.31 | 38.63 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 24.82 | 38.39 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 36.32 | 36.41 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 36.32 | 36.41 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 36.08 | 36.16 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 27.84 | 35.83 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 35.84 | 33.22 |
| KXG24955 | Sorghum | nucleus | 30.39 | 30.87 |
| Zm00001d050112_P011 | Maize | nucleus | 29.78 | 29.04 |
| Bra038015.1-P | Field mustard | nucleus | 17.8 | 24.14 |
| Bra039379.1-P | Field mustard | nucleus | 10.41 | 21.94 |
| Bra022970.1-P | Field mustard | nucleus | 19.25 | 19.65 |
| Bra013287.1-P | Field mustard | nucleus | 18.16 | 19.23 |
| Bra021900.1-P | Field mustard | nucleus | 18.77 | 18.88 |
| Bra010832.1-P | Field mustard | nucleus | 18.64 | 18.73 |
| Bra030134.1-P | Field mustard | nucleus | 17.68 | 18.67 |
| Bra021022.1-P | Field mustard | nucleus | 13.68 | 18.2 |
| Bra027380.1-P | Field mustard | nucleus | 19.73 | 18.07 |
| Bra032310.1-P | Field mustard | nucleus | 18.77 | 18.04 |
| Bra021524.1-P | Field mustard | nucleus | 18.28 | 17.34 |
Protein Annotations
| EnsemblPlants:Bra029667.1 | EnsemblPlants:Bra029667.1-P | EnsemblPlantsGene:Bra029667 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI0002547ED3 | UniProt:M4ELJ9 | MapMan:35.2 | : | : |
Description
AT3G07660 (E=0.0) | unknown protein
Coordinates
chrA05:+:22730096..22734383
Molecular Weight (calculated)
88017.4 Da
IEP (calculated)
6.670
GRAVY (calculated)
-0.682
Length
826 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGSGARVSI GADTRKTIQT IKEITAGNYS EDEIHAMLLD CSMNPDEAAQ RLLLQDPFLE VKKKRDKRKE NLSNKDSVEP QWRSGGPGRG SRGGRMNFSS
101: RHSSHDGAGA KNSFRKENSP KQVADPSTST SQQQIKTKDN ALVCSLPPVM DKSSVGLTSG SPDGAPSAVE SSKNRVALGS NAVHTEQKSA NSLPLSRPSS
201: SEVRFTSSNS KPVSEQHLGQ SKLQNRSRGV GKATVNDAYV PSPASSHSNS TGSRPSSNYS NRSHHTVGPQ RVKEWKPKPV NHTTTQGSGA SATAEALAVP
301: TEASEKSVED VVSSAEGTSR LQRQLEDLQI QRQHVIIPNH ILVPEAERTK FSFGSFDAGF SITSSSVAFP ENAPLSQNSQ EVEDSLEADE LSHLNVHSTE
401: KDEENNVHSE SLSQVPNDMA GEGSPSQVPN DMAGEGIAAS NAAQVYDVSK QESLLESESN QNSFDHVPCN IIGPVPPAPA SQHPQFENAA DPQARDALRI
501: PNFVVQQPFD TASYYAQFYR SGPDSDGRVS PFVSPGVASK FNGNVTVLPP HSSQTMQEGG NNLVLSTASP TPLVTQPSGL MQSSIPVTQQ PVPFLRPPGL
601: HMSHYPPNYM PYGHYFSPFY LPHPAMQQFL SNGAFAQQPQ ASSVYPAPPP PPGAATGGKY TLPHHKPGNN NTGNLTHVGV PGGYGPPSHG SFPAEYNPNS
701: GASAGNSTSN EDLNTLQLKE NNGYSTTGQQ SEALPVWIAG PGRDVPSSFY GLQHHGQHVT YAPAQAAHVT FPGMYHPGQA VTAAGGVHHP LLQQSQGVAG
801: AEMVAPGPPN VFQQPQQTPM NWPSNY
101: RHSSHDGAGA KNSFRKENSP KQVADPSTST SQQQIKTKDN ALVCSLPPVM DKSSVGLTSG SPDGAPSAVE SSKNRVALGS NAVHTEQKSA NSLPLSRPSS
201: SEVRFTSSNS KPVSEQHLGQ SKLQNRSRGV GKATVNDAYV PSPASSHSNS TGSRPSSNYS NRSHHTVGPQ RVKEWKPKPV NHTTTQGSGA SATAEALAVP
301: TEASEKSVED VVSSAEGTSR LQRQLEDLQI QRQHVIIPNH ILVPEAERTK FSFGSFDAGF SITSSSVAFP ENAPLSQNSQ EVEDSLEADE LSHLNVHSTE
401: KDEENNVHSE SLSQVPNDMA GEGSPSQVPN DMAGEGIAAS NAAQVYDVSK QESLLESESN QNSFDHVPCN IIGPVPPAPA SQHPQFENAA DPQARDALRI
501: PNFVVQQPFD TASYYAQFYR SGPDSDGRVS PFVSPGVASK FNGNVTVLPP HSSQTMQEGG NNLVLSTASP TPLVTQPSGL MQSSIPVTQQ PVPFLRPPGL
601: HMSHYPPNYM PYGHYFSPFY LPHPAMQQFL SNGAFAQQPQ ASSVYPAPPP PPGAATGGKY TLPHHKPGNN NTGNLTHVGV PGGYGPPSHG SFPAEYNPNS
701: GASAGNSTSN EDLNTLQLKE NNGYSTTGQQ SEALPVWIAG PGRDVPSSFY GLQHHGQHVT YAPAQAAHVT FPGMYHPGQA VTAAGGVHHP LLQQSQGVAG
801: AEMVAPGPPN VFQQPQQTPM NWPSNY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.