Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G175100.1 | Wheat | nucleus | 97.69 | 97.69 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 97.09 | 97.09 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 62.01 | 95.69 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 94.17 | 87.09 |
| Os09t0261400-01 | Rice | plasma membrane | 6.67 | 68.75 |
| KXG24955 | Sorghum | nucleus | 48.66 | 49.32 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 48.3 | 47.44 |
| Zm00001d050112_P011 | Maize | nucleus | 47.45 | 46.16 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 48.42 | 45.5 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 44.54 | 42.58 |
| KRH72609 | Soybean | nucleus | 45.02 | 41.97 |
| KRH16977 | Soybean | nucleus | 43.93 | 41.23 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 31.55 | 40.5 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 43.45 | 39.96 |
| Solyc07g045230.2.1 | Tomato | nucleus | 42.48 | 39.95 |
| Solyc05g018750.2.1 | Tomato | nucleus | 38.96 | 39.34 |
| CDY28028 | Canola | nucleus | 37.14 | 37.87 |
| CDY22126 | Canola | nucleus | 37.5 | 37.73 |
| Bra040021.1-P | Field mustard | nucleus | 37.62 | 37.71 |
| AT3G07660.1 | Thale cress | nucleus | 38.47 | 37.69 |
| CDY35953 | Canola | nucleus | 37.01 | 37.42 |
| Bra029667.1-P | Field mustard | nucleus | 36.41 | 36.32 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 34.59 | 36.26 |
| KRH14203 | Soybean | nucleus | 30.34 | 32.34 |
| KRH73929 | Soybean | nucleus | 29.25 | 31.54 |
| PGSC0003DMT400057353 | Potato | nucleus | 27.43 | 29.09 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 23.42 | 21.78 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 19.3 | 19.53 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 20.15 | 19.15 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 17.35 | 16.92 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G170600.1 | EnsemblPlantsGene:TraesCS5A01G170600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 |
| PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5A:+:363844987..363855928
Molecular Weight (calculated)
87225.6 Da
IEP (calculated)
5.897
GRAVY (calculated)
-0.611
Length
824 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAARVSIPA AVRRTIQNIK EIAGNHTDEE VYAALRECDM DPNETAQKLL HQDTFHEVKR KRDKKKESNK ESVDPRWRPG TQGRGGKGGR GNYSSRQLSN
101: CSDGTGRNAP AGKENDLNPS MDKCTSPSPV NPSTETKLST SILSSSGGLS NGPSQPLAPV AKHSQPTCHL PPSDSKGLAG VKGTPEEVVL DLVSHVNNSS
201: IQALGVGTSV SDPLLTPAIQ PHSHGGEIVA NKHAVRSQRS AGEYKVVSDD ASALPKDTPQ SSGSSSTVPP SGSRPSSSYS SRSQQPSGLQ KAVPNKEWKP
301: KPTNKPTQAE NVARDDVAVT VEVVPQSVPA PTSINKEDIS SGLDKRLGDM QLFDKQHVII PDHLQVTESE KYGLSFGSFG TSFEQAPSIP NDHGSEKSSI
401: LPEYESSQDL EEAAEEPASS HQSASFTVEA AAESGQQQLT AEMTDNISPQ EADNLSSTPK TAEFDESKDT AASHMPQDSV QNAYSTFAVP PQSQGNQIPL
501: LETSEYQVQQ PNDFSANYYT QIYRPMADAD GHISPFTAPG AAIKSGNMPV LPSQTGQTPE ELNSVMLSSS GPTPLATLTP GAVPSSISIP QQPLPMFRQP
601: VGVHVPHYQP SFIPYNQYIS PFYVPPHALH HFMGNAAFPQ APSPGSMYPP VSSAVAPPVK YSATAYKPGA NTGSQTYAVT PGAYGTYGSN PSVYTNNNVV
701: PSGTSAENGD VSGSQFKENN IYIAGQQSEG STVWIPAPGR DLSALQSSSF YGLPPQGQHL AFAPAQAGHG AYGGMYHPAQ TLAGAAVHPL LQPSQTIAGA
801: VEMVGPPANG YQQPQHAQMN WANY
101: CSDGTGRNAP AGKENDLNPS MDKCTSPSPV NPSTETKLST SILSSSGGLS NGPSQPLAPV AKHSQPTCHL PPSDSKGLAG VKGTPEEVVL DLVSHVNNSS
201: IQALGVGTSV SDPLLTPAIQ PHSHGGEIVA NKHAVRSQRS AGEYKVVSDD ASALPKDTPQ SSGSSSTVPP SGSRPSSSYS SRSQQPSGLQ KAVPNKEWKP
301: KPTNKPTQAE NVARDDVAVT VEVVPQSVPA PTSINKEDIS SGLDKRLGDM QLFDKQHVII PDHLQVTESE KYGLSFGSFG TSFEQAPSIP NDHGSEKSSI
401: LPEYESSQDL EEAAEEPASS HQSASFTVEA AAESGQQQLT AEMTDNISPQ EADNLSSTPK TAEFDESKDT AASHMPQDSV QNAYSTFAVP PQSQGNQIPL
501: LETSEYQVQQ PNDFSANYYT QIYRPMADAD GHISPFTAPG AAIKSGNMPV LPSQTGQTPE ELNSVMLSSS GPTPLATLTP GAVPSSISIP QQPLPMFRQP
601: VGVHVPHYQP SFIPYNQYIS PFYVPPHALH HFMGNAAFPQ APSPGSMYPP VSSAVAPPVK YSATAYKPGA NTGSQTYAVT PGAYGTYGSN PSVYTNNNVV
701: PSGTSAENGD VSGSQFKENN IYIAGQQSEG STVWIPAPGR DLSALQSSSF YGLPPQGQHL AFAPAQAGHG AYGGMYHPAQ TLAGAAVHPL LQPSQTIAGA
801: VEMVGPPANG YQQPQHAQMN WANY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.