Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G411700.1 | Wheat | nucleus | 98.96 | 98.62 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 98.85 | 98.17 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 95.96 | 87.86 |
| Os05t0566900-01 | Rice | extracellular | 73.82 | 75.12 |
| KXG22544 | Sorghum | nucleus | 66.09 | 66.94 |
| Zm00001d009591_P006 | Maize | nucleus | 62.75 | 63.48 |
| Zm00001d039041_P007 | Maize | nucleus | 64.71 | 62.2 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.42 | 59.49 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 15.34 | 59.38 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 55.71 | 59.34 |
| CDY61561 | Canola | cytosol | 3.92 | 51.52 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.54 | 45.28 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 42.1 | 43.71 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 42.45 | 43.35 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 41.52 | 41.0 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 41.98 | 40.0 |
| Solyc02g071180.2.1 | Tomato | nucleus | 37.49 | 39.02 |
| PGSC0003DMT400007972 | Potato | nucleus | 37.6 | 39.0 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 38.98 | 38.81 |
| CDY48333 | Canola | nucleus | 35.18 | 37.06 |
| KRH59101 | Soybean | nucleus | 36.1 | 37.04 |
| Solyc03g005750.2.1 | Tomato | nucleus | 35.87 | 36.89 |
| KRH42968 | Soybean | nucleus | 35.52 | 36.8 |
| CDY15632 | Canola | nucleus | 33.33 | 36.77 |
| CDY43334 | Canola | nucleus | 34.72 | 36.62 |
| AT1G29370.1 | Thale cress | nucleus | 35.06 | 36.58 |
| Bra030134.1-P | Field mustard | nucleus | 32.99 | 36.57 |
| CDX90188 | Canola | nucleus | 34.49 | 36.37 |
| Bra010832.1-P | Field mustard | nucleus | 34.49 | 36.37 |
| KRH36716 | Soybean | nucleus | 35.06 | 36.28 |
| AT1G29350.1 | Thale cress | nucleus | 34.72 | 36.22 |
| CDX94662 | Canola | nucleus | 33.1 | 35.65 |
| Bra021900.1-P | Field mustard | nucleus | 33.68 | 35.57 |
| CDY43685 | Canola | nucleus | 33.91 | 35.42 |
| KRH11725 | Soybean | nucleus | 34.26 | 35.36 |
| Bra032310.1-P | Field mustard | nucleus | 34.95 | 35.27 |
| CDX99817 | Canola | nucleus | 25.03 | 35.0 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 34.03 | 34.91 |
| Bra022970.1-P | Field mustard | nucleus | 32.18 | 34.49 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.42 | 34.43 |
| CDX84653 | Canola | nucleus | 32.06 | 34.19 |
| CDY61562 | Canola | nucleus | 29.76 | 33.86 |
| CDX78828 | Canola | nucleus | 26.18 | 32.52 |
| CDY61669 | Canola | nucleus | 27.57 | 32.3 |
| Bra013287.1-P | Field mustard | nucleus | 28.6 | 31.79 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 24.11 | 31.19 |
| AT4G18150.1 | Thale cress | nucleus | 25.95 | 29.68 |
| CDY08888 | Canola | nucleus | 15.57 | 23.4 |
| CDX76544 | Canola | nucleus | 14.99 | 22.85 |
| Bra021022.1-P | Field mustard | nucleus | 15.92 | 22.22 |
| CDY11787 | Canola | nucleus | 17.88 | 21.03 |
| AT5G46380.2 | Thale cress | nucleus | 15.8 | 20.69 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 19.15 | 20.15 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 15.11 | 14.79 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G403900.1 | EnsemblPlantsGene:TraesCS1A01G403900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:567318504..567326918
Molecular Weight (calculated)
92427.7 Da
IEP (calculated)
5.019
GRAVY (calculated)
-0.723
Length
867 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGAGGGKG AAAAGPVPQV SRKLVQSLKE IVNRPDAEIY AALRECSMDP DEAVSRLLSQ DTFQEVKSKR DKKKEVKETP EPRSRAANNA TSRGVRGGPD
101: RGGRNNSAYN SSIDNMTSRS SVSGSGMPST NSTQKQTVSS SSVNKNLVAD APSVPPQTSS GFQHGWSGTP GQLSMADIVK MGGRPQAQGK PSTKTVVTAD
201: KGYAGQYPSL PTTVNQNAKQ SASTVAPTEL DQGLPSAQDS VLVKDHSHTA ADNKQKYDND WSPQDDPPAG NQSSIPETSG DPSLFEAPLH PSTHVADAVY
301: LHENSYLDDN ISAAMRSGNA SERHLDHYGG NSEYNDGLLQ NSSTYLAQTH SHIEDQAEES NADVSAAANF QGLSLHDEEL AATKFAEDNP AVIIPDHLQV
401: SNTGCAGLSF GSFGSGAFSG LLPPPKSTEN NVELPIVEES EPIDHTDTRD QDFYEIPPNS PPNENLEEIM GANTENLDVP SVQQPDVLRQ EILDDPSGVQ
501: YNLPSVSSHA YANPAQPNAM DAMQGSNQAH TLSHLSSLLQ SNTLQQHNLL GSNMAPLRDL DFGLSPLLAA QAQSMGARYN SAAPTTTGMQ EPMKPGVFSN
601: TQSTQNLPST SIQMAPSLPQ QLVHPYSQPT LPIAPFANMI GANMIGYNPY LAQNYPAYLP STAFQQAYSS NGQFHQSAAA VPGAGMKYSM PQYKNNMSGA
701: NLQQQQQPSS VISGYAGFGS SSNLPGNFAL NQNAAPPSAN LGFDEALSAQ YKEANQYMAL QQQGDNSAMW LHGAGSRTAS ALPPTQFYGY QGQSQQQGAF
801: RQAQQPQQPS QYGGHGYPAF YHSQGGMAQE HHPQNPADGA LNGYQAAPQQ QQQQQPSHQS WQQHANY
101: RGGRNNSAYN SSIDNMTSRS SVSGSGMPST NSTQKQTVSS SSVNKNLVAD APSVPPQTSS GFQHGWSGTP GQLSMADIVK MGGRPQAQGK PSTKTVVTAD
201: KGYAGQYPSL PTTVNQNAKQ SASTVAPTEL DQGLPSAQDS VLVKDHSHTA ADNKQKYDND WSPQDDPPAG NQSSIPETSG DPSLFEAPLH PSTHVADAVY
301: LHENSYLDDN ISAAMRSGNA SERHLDHYGG NSEYNDGLLQ NSSTYLAQTH SHIEDQAEES NADVSAAANF QGLSLHDEEL AATKFAEDNP AVIIPDHLQV
401: SNTGCAGLSF GSFGSGAFSG LLPPPKSTEN NVELPIVEES EPIDHTDTRD QDFYEIPPNS PPNENLEEIM GANTENLDVP SVQQPDVLRQ EILDDPSGVQ
501: YNLPSVSSHA YANPAQPNAM DAMQGSNQAH TLSHLSSLLQ SNTLQQHNLL GSNMAPLRDL DFGLSPLLAA QAQSMGARYN SAAPTTTGMQ EPMKPGVFSN
601: TQSTQNLPST SIQMAPSLPQ QLVHPYSQPT LPIAPFANMI GANMIGYNPY LAQNYPAYLP STAFQQAYSS NGQFHQSAAA VPGAGMKYSM PQYKNNMSGA
701: NLQQQQQPSS VISGYAGFGS SSNLPGNFAL NQNAAPPSAN LGFDEALSAQ YKEANQYMAL QQQGDNSAMW LHGAGSRTAS ALPPTQFYGY QGQSQQQGAF
801: RQAQQPQQPS QYGGHGYPAF YHSQGGMAQE HHPQNPADGA LNGYQAAPQQ QQQQQPSHQS WQQHANY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.