Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48333 | Canola | nucleus | 93.48 | 97.57 |
| CDX99817 | Canola | nucleus | 68.92 | 95.48 |
| Bra010832.1-P | Field mustard | nucleus | 78.93 | 82.48 |
| Bra030134.1-P | Field mustard | nucleus | 73.57 | 80.82 |
| AT1G29370.1 | Thale cress | nucleus | 75.09 | 77.62 |
| AT1G29350.1 | Thale cress | nucleus | 74.97 | 77.5 |
| Bra021900.1-P | Field mustard | nucleus | 60.65 | 63.46 |
| Bra022970.1-P | Field mustard | nucleus | 59.72 | 63.41 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.82 | 63.29 |
| Solyc09g018250.2.1 | Tomato | plastid | 6.4 | 51.89 |
| KRH36716 | Soybean | nucleus | 46.33 | 47.49 |
| KRH42968 | Soybean | nucleus | 46.1 | 47.31 |
| KRH11725 | Soybean | nucleus | 45.87 | 46.9 |
| KRH59101 | Soybean | nucleus | 45.87 | 46.63 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 47.26 | 46.61 |
| Solyc02g071180.2.1 | Tomato | nucleus | 43.07 | 44.42 |
| PGSC0003DMT400007972 | Potato | nucleus | 42.49 | 43.66 |
| Zm00001d035703_P001 | Maize | nucleus | 13.62 | 43.33 |
| Solyc03g005750.2.1 | Tomato | nucleus | 42.37 | 43.18 |
| Bra013287.1-P | Field mustard | nucleus | 37.02 | 40.77 |
| Zm00001d017358_P001 | Maize | nucleus | 5.12 | 40.0 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 36.55 | 37.6 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.96 | 36.32 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 35.97 | 35.19 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 35.27 | 34.95 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 35.27 | 34.83 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 35.27 | 34.71 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 34.23 | 34.63 |
| Os05t0566900-01 | Rice | extracellular | 34.11 | 34.39 |
| KXG33052 | Sorghum | nucleus | 32.83 | 34.26 |
| KXG22544 | Sorghum | nucleus | 33.88 | 34.0 |
| Os01t0663800-01 | Rice | plasma membrane | 33.53 | 33.84 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 35.74 | 33.74 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 5.94 | 33.33 |
| Zm00001d011517_P002 | Maize | nucleus | 32.48 | 33.21 |
| Zm00001d043962_P001 | Maize | nucleus | 32.36 | 33.02 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 32.01 | 32.54 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 31.78 | 32.38 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 30.62 | 32.31 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 32.6 | 32.18 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 35.27 | 32.0 |
| Zm00001d009591_P006 | Maize | nucleus | 31.55 | 31.62 |
| Zm00001d039041_P007 | Maize | nucleus | 32.95 | 31.37 |
| KXG22612 | Sorghum | nucleus | 28.87 | 29.81 |
| Zm00001d039138_P012 | Maize | nucleus | 28.64 | 29.67 |
| Zm00001d004950_P001 | Maize | nucleus | 10.59 | 29.35 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 7.57 | 29.02 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 27.94 | 28.4 |
| Os05t0581800-01 | Rice | nucleus | 27.82 | 28.05 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 27.82 | 28.05 |
| Zm00001d009683_P004 | Maize | nucleus | 27.24 | 27.5 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 25.84 | 25.75 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 24.68 | 24.85 |
| Bra021022.1-P | Field mustard | nucleus | 17.11 | 23.67 |
| Bra039379.1-P | Field mustard | nucleus | 8.73 | 19.13 |
| Bra040021.1-P | Field mustard | nucleus | 18.04 | 18.86 |
| Bra029667.1-P | Field mustard | nucleus | 18.04 | 18.77 |
| Bra038015.1-P | Field mustard | nucleus | 11.41 | 16.09 |
| Bra021524.1-P | Field mustard | nucleus | 14.9 | 14.7 |
| Bra027380.1-P | Field mustard | nucleus | 15.25 | 14.52 |
Protein Annotations
| EnsemblPlants:Bra032310.1 | EnsemblPlants:Bra032310.1-P | EnsemblPlantsGene:Bra032310 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI00025426A0 | UniProt:M4EU28 | MapMan:35.2 | : | : |
Description
AT1G29370 (E=3e-308) | kinase-related
Coordinates
chrA09:+:22635877..22641096
Molecular Weight (calculated)
93624.2 Da
IEP (calculated)
5.641
GRAVY (calculated)
-0.960
Length
859 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSIKVVV GGGGGRKGNN GMNDIPSGSR KIVQSLKEVV NSPEAEIYAM LKECNMDPNE AVHRLLSQDP FHEVKSKKEK KKETRDIPDS RPRGANNRYN
101: SGGRGGSDRY AGRSASTHLS SADSGNFQGK STSKKESGTQ GYTSSWSSAS GVPNHQLTPH SDSVVTENKL PSATGDGISP SQPASGHQTA WFGAPGQMSM
201: ADIVKMGRPQ NKTTNSKQNV NMRSEINHEH EANADHQVPV KEEWPSIQKP LAPGKPSVSV APAESEVCDG QADFQSARVD QHLSDRLENI HLAESGPSEN
301: LRVDQLQPNS VTVKNVQEDD SGVSSEFNEN QYAYQTQSHP VEHHKDEDED SSGSADVQQL TVDSHDQAAS HEEDRRAVVI PNHLLIHTEE CSQLSFGSFG
401: AFGSKSLSNN AEETPDVAQQ IEHSDARNTE FYGDEHLEST VNGNMGHAAA AGSYDDSLES RQENPETVQE HQYTYAQSEP GYANQQLNTA YDASQTHAQN
501: QTQNPVTVQE HQYAFAQSEP GYSKQQQQLN TAYDASQTHA QNLASLSNVM GYTHSVPNSL LGQTAQNARE LDFQYSPFAQ SMQSRNNNNA SSLGGQSISM
601: PEALRGSGIP ATQPTQQNLA GANIATGPAL PQQQLPMRPY SQPTMPLAHF ANMISYPMIP QNYPYMPSAF QQAFAGNSSY HQQQLAALLP QYKANLSPST
701: LPQSGTAPAS AYGFGNSTNV GSAGNFPLNQ QSAPTGYEDV LSSQYKENSN LLALQQQQQQ QQNDNSAMWH HGHGSRTMSG VPANAYFNLQ QQQQLQQAQQ
801: AAGGYRQAQQ QQQYGSHGYP NFYQSQTEMP HERQQQNPRD AAGAQPSNQT QQQLWQNSY
101: SGGRGGSDRY AGRSASTHLS SADSGNFQGK STSKKESGTQ GYTSSWSSAS GVPNHQLTPH SDSVVTENKL PSATGDGISP SQPASGHQTA WFGAPGQMSM
201: ADIVKMGRPQ NKTTNSKQNV NMRSEINHEH EANADHQVPV KEEWPSIQKP LAPGKPSVSV APAESEVCDG QADFQSARVD QHLSDRLENI HLAESGPSEN
301: LRVDQLQPNS VTVKNVQEDD SGVSSEFNEN QYAYQTQSHP VEHHKDEDED SSGSADVQQL TVDSHDQAAS HEEDRRAVVI PNHLLIHTEE CSQLSFGSFG
401: AFGSKSLSNN AEETPDVAQQ IEHSDARNTE FYGDEHLEST VNGNMGHAAA AGSYDDSLES RQENPETVQE HQYTYAQSEP GYANQQLNTA YDASQTHAQN
501: QTQNPVTVQE HQYAFAQSEP GYSKQQQQLN TAYDASQTHA QNLASLSNVM GYTHSVPNSL LGQTAQNARE LDFQYSPFAQ SMQSRNNNNA SSLGGQSISM
601: PEALRGSGIP ATQPTQQNLA GANIATGPAL PQQQLPMRPY SQPTMPLAHF ANMISYPMIP QNYPYMPSAF QQAFAGNSSY HQQQLAALLP QYKANLSPST
701: LPQSGTAPAS AYGFGNSTNV GSAGNFPLNQ QSAPTGYEDV LSSQYKENSN LLALQQQQQQ QQNDNSAMWH HGHGSRTMSG VPANAYFNLQ QQQQLQQAQQ
801: AAGGYRQAQQ QQQYGSHGYP NFYQSQTEMP HERQQQNPRD AAGAQPSNQT QQQLWQNSY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.