Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P25510_001 | Banana | nucleus | 68.22 | 71.74 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 66.4 | 64.07 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 61.73 | 63.84 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.35 | 59.49 |
| CDY61561 | Canola | cytosol | 4.21 | 56.06 |
| Zm00001d017358_P001 | Maize | nucleus | 6.15 | 49.09 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 4.9 | 48.31 |
| Zm00001d035703_P001 | Maize | nucleus | 14.46 | 47.04 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 43.74 | 44.09 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.24 | 43.4 |
| Os05t0566900-01 | Rice | extracellular | 41.46 | 42.72 |
| KXG33052 | Sorghum | nucleus | 39.98 | 42.65 |
| Zm00001d011517_P002 | Maize | nucleus | 40.09 | 41.9 |
| Os01t0663800-01 | Rice | plasma membrane | 40.43 | 41.72 |
| KXG22544 | Sorghum | nucleus | 40.66 | 41.71 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 41.23 | 41.61 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 41.0 | 41.52 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 39.86 | 41.42 |
| KRH59101 | Soybean | nucleus | 39.86 | 41.42 |
| PGSC0003DMT400007972 | Potato | nucleus | 39.41 | 41.39 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 41.0 | 41.24 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 39.52 | 41.16 |
| KRH42968 | Soybean | nucleus | 39.07 | 40.98 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 37.81 | 40.79 |
| Solyc02g071180.2.1 | Tomato | nucleus | 38.61 | 40.7 |
| Zm00001d043962_P001 | Maize | nucleus | 38.72 | 40.38 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 39.86 | 40.23 |
| Zm00001d009591_P006 | Maize | nucleus | 38.72 | 39.67 |
| KRH36716 | Soybean | nucleus | 37.81 | 39.62 |
| Solyc03g005750.2.1 | Tomato | nucleus | 37.59 | 39.15 |
| KRH11725 | Soybean | nucleus | 37.36 | 39.05 |
| Bra030134.1-P | Field mustard | nucleus | 33.94 | 38.11 |
| CDY48333 | Canola | nucleus | 35.65 | 38.03 |
| AT1G29370.1 | Thale cress | nucleus | 35.99 | 38.03 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 9.68 | 37.95 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 40.89 | 37.91 |
| Zm00001d039041_P007 | Maize | nucleus | 38.84 | 37.8 |
| AT1G29350.1 | Thale cress | nucleus | 35.76 | 37.79 |
| CDY43334 | Canola | nucleus | 35.08 | 37.47 |
| CDY15632 | Canola | nucleus | 33.49 | 37.4 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 6.49 | 37.25 |
| CDX90188 | Canola | nucleus | 34.85 | 37.23 |
| Bra010832.1-P | Field mustard | nucleus | 34.62 | 36.98 |
| CDX94662 | Canola | nucleus | 33.71 | 36.77 |
| Bra021900.1-P | Field mustard | nucleus | 34.05 | 36.42 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.77 | 36.32 |
| Bra032310.1-P | Field mustard | nucleus | 35.19 | 35.97 |
| CDY43685 | Canola | nucleus | 33.71 | 35.66 |
| Bra022970.1-P | Field mustard | nucleus | 32.46 | 35.23 |
| CDX84653 | Canola | nucleus | 32.46 | 35.06 |
| CDX99817 | Canola | nucleus | 24.72 | 35.0 |
| Zm00001d039138_P012 | Maize | nucleus | 33.03 | 34.98 |
| Zm00001d004950_P001 | Maize | nucleus | 12.3 | 34.84 |
| KXG22612 | Sorghum | nucleus | 32.69 | 34.5 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 32.92 | 34.2 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 32.8 | 33.8 |
| Os05t0581800-01 | Rice | nucleus | 32.57 | 33.57 |
| CDY61562 | Canola | nucleus | 29.04 | 33.46 |
| Zm00001d009683_P004 | Maize | nucleus | 32.23 | 33.26 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 24.6 | 32.24 |
| CDY61669 | Canola | nucleus | 26.77 | 31.76 |
| CDX78828 | Canola | nucleus | 24.83 | 31.23 |
| Bra013287.1-P | Field mustard | nucleus | 27.68 | 31.15 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 30.07 | 30.63 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 29.73 | 30.6 |
| AT4G18150.1 | Thale cress | nucleus | 25.63 | 29.68 |
| CDY11787 | Canola | nucleus | 19.93 | 23.74 |
| CDY08888 | Canola | nucleus | 15.03 | 22.88 |
| CDX76544 | Canola | nucleus | 14.46 | 22.32 |
| AT5G46380.2 | Thale cress | nucleus | 16.4 | 21.75 |
| Bra021022.1-P | Field mustard | nucleus | 14.92 | 21.09 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 20.84 | 20.87 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 19.7 | 20.62 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 19.48 | 19.84 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 13.44 | 18.38 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 16.4 | 16.96 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 12.76 | 14.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P31170_001 | EnsemblPlants:GSMUA_Achr3T31170_001 | EnsemblPlantsGene:GSMUA_Achr3G31170_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | SEG:seg |
| SUPFAM:SSF46934 | UniParc:UPI000296B870 | UniProt:M0SJD1 | MapMan:35.2 | : | : |
Description
Putative protein of unknown function DUF1296 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G31170_001]
Coordinates
chr3:+:29591282..29601272
Molecular Weight (calculated)
94797.2 Da
IEP (calculated)
6.528
GRAVY (calculated)
-0.543
Length
878 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGACRANGA AAPIPTGSRK LVQSLREILH CPEPEIYAML RECNMDPNEA VHRLLAQDTF HEVKSKREKK KEIREPPESR SRTVNSSSGH GTRVGTDLGA
101: RSTSSQSSST DYGTFKGKPN HKKENGTNAL PNSLLLESAT VSSSPTQRPT IPSKSVPQGN VIQLTSITGG LSMPMQSSSV FQNSWLGRPG HVSMADIVKM
201: GRPQNMLKMS HHKAKQSPAT VLPSDLDEKL ESRQESTHVL EISHNVRIAE GQHNVDDGWS LIDGQPMESV STTPEMSGVS TGYANSLELA SSNLVDDGTH
301: LHVDPHLEEI HNLEESLNVT IMPAESRSTS VSDRQIQVDT SKGASHINEG LLKSTNSYSS QRLDLDHHEV MSEMTNLPIC LVSLQHVMSC AASSISSDAA
401: NFSQLSLHET STKPIEDSPA VIIPNHLRVT NADCAYLSFG SFGSGAFAGS FPSKPLESNL EVTPVIDDAS RIANSDARNE SDSNRRLKPM LTENVASRSH
501: AGPENLDEPS TSQPEMVRND PLDTTYGLQY NSPSGSSYAI SSCTQPNATT YTYPQGNTQM QSLSHLSSLM QQPNTLQNSI LAASIPHLRD FDLPLSPLLT
601: TQSMPTRYST TESSISGSKI SMPEALKPGV FSDAQSTPQS LPSTTMLTSL VFPQNLPVHH YSQPALPLGH FANIISYPYL PHSYAYLPSV HQAFTTNSPF
701: HQPTAAVPSA GMKYSQPQYR SSLSVASLPQ ASAIGSAYGG FGSSANVPGG YTLNHTSAST NTMIGLDEAL NLQHREASHH VPLQQSENPA MWIHGGGSRT
801: MSALPTSTFY NYPGQNQHSG FRQTQQSSHL GALGYPNLHH DAQAGPSQEH QQNLSDGNMS GSQTVQSQPA NQIWQHGY
101: RSTSSQSSST DYGTFKGKPN HKKENGTNAL PNSLLLESAT VSSSPTQRPT IPSKSVPQGN VIQLTSITGG LSMPMQSSSV FQNSWLGRPG HVSMADIVKM
201: GRPQNMLKMS HHKAKQSPAT VLPSDLDEKL ESRQESTHVL EISHNVRIAE GQHNVDDGWS LIDGQPMESV STTPEMSGVS TGYANSLELA SSNLVDDGTH
301: LHVDPHLEEI HNLEESLNVT IMPAESRSTS VSDRQIQVDT SKGASHINEG LLKSTNSYSS QRLDLDHHEV MSEMTNLPIC LVSLQHVMSC AASSISSDAA
401: NFSQLSLHET STKPIEDSPA VIIPNHLRVT NADCAYLSFG SFGSGAFAGS FPSKPLESNL EVTPVIDDAS RIANSDARNE SDSNRRLKPM LTENVASRSH
501: AGPENLDEPS TSQPEMVRND PLDTTYGLQY NSPSGSSYAI SSCTQPNATT YTYPQGNTQM QSLSHLSSLM QQPNTLQNSI LAASIPHLRD FDLPLSPLLT
601: TQSMPTRYST TESSISGSKI SMPEALKPGV FSDAQSTPQS LPSTTMLTSL VFPQNLPVHH YSQPALPLGH FANIISYPYL PHSYAYLPSV HQAFTTNSPF
701: HQPTAAVPSA GMKYSQPQYR SSLSVASLPQ ASAIGSAYGG FGSSANVPGG YTLNHTSAST NTMIGLDEAL NLQHREASHH VPLQQSENPA MWIHGGGSRT
801: MSALPTSTFY NYPGQNQHSG FRQTQQSSHL GALGYPNLHH DAQAGPSQEH QQNLSDGNMS GSQTVQSQPA NQIWQHGY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.