Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15632 | Canola | nucleus | 89.32 | 91.48 |
| CDY48333 | Canola | nucleus | 81.49 | 79.71 |
| CDY43334 | Canola | nucleus | 81.37 | 79.68 |
| CDX90188 | Canola | nucleus | 80.99 | 79.32 |
| CDX99817 | Canola | nucleus | 60.75 | 78.87 |
| AT1G29370.1 | Thale cress | nucleus | 78.63 | 76.17 |
| AT1G29350.1 | Thale cress | nucleus | 78.51 | 76.05 |
| CDY61561 | Canola | cytosol | 5.34 | 65.15 |
| CDX84653 | Canola | nucleus | 61.61 | 61.01 |
| CDY43685 | Canola | nucleus | 62.61 | 60.72 |
| CDY61562 | Canola | nucleus | 56.89 | 60.1 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.84 | 59.49 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 48.32 | 58.06 |
| Solyc09g018250.2.1 | Tomato | plastid | 7.08 | 53.77 |
| CDY11787 | Canola | nucleus | 48.45 | 52.92 |
| KRH36716 | Soybean | nucleus | 47.83 | 45.94 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 49.69 | 45.92 |
| KRH42968 | Soybean | nucleus | 47.33 | 45.52 |
| KRH11725 | Soybean | nucleus | 47.33 | 45.36 |
| KRH59101 | Soybean | nucleus | 47.58 | 45.33 |
| Solyc02g071180.2.1 | Tomato | nucleus | 45.59 | 44.06 |
| PGSC0003DMT400007972 | Potato | nucleus | 44.97 | 43.3 |
| Solyc03g005750.2.1 | Tomato | nucleus | 43.48 | 41.52 |
| CDY61669 | Canola | nucleus | 37.52 | 40.81 |
| Zm00001d035703_P001 | Maize | nucleus | 13.29 | 39.63 |
| CDX78828 | Canola | nucleus | 34.16 | 39.4 |
| Zm00001d017358_P001 | Maize | nucleus | 4.97 | 36.36 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 37.14 | 35.81 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 9.32 | 35.38 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 36.77 | 33.71 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 35.4 | 33.57 |
| KXG33052 | Sorghum | nucleus | 34.29 | 33.54 |
| Os05t0566900-01 | Rice | extracellular | 35.4 | 33.45 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 35.65 | 33.1 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 35.78 | 32.99 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 35.53 | 32.87 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 37.14 | 32.86 |
| KXG22544 | Sorghum | nucleus | 34.66 | 32.59 |
| Zm00001d011517_P002 | Maize | nucleus | 33.66 | 32.26 |
| Os01t0663800-01 | Rice | plasma membrane | 33.79 | 31.96 |
| Zm00001d043962_P001 | Maize | nucleus | 33.42 | 31.95 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 32.92 | 31.36 |
| Zm00001d009591_P006 | Maize | nucleus | 33.17 | 31.16 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 32.42 | 30.96 |
| Zm00001d039041_P007 | Maize | nucleus | 34.53 | 30.82 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 33.29 | 30.8 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 31.06 | 30.71 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 8.45 | 30.36 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 35.28 | 29.99 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 5.59 | 29.41 |
| KXG22612 | Sorghum | nucleus | 29.32 | 28.37 |
| Zm00001d039138_P012 | Maize | nucleus | 28.94 | 28.11 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 29.44 | 28.05 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 28.94 | 27.35 |
| CDY08888 | Canola | nucleus | 19.38 | 27.04 |
| Os05t0581800-01 | Rice | nucleus | 27.83 | 26.29 |
| Zm00001d004950_P001 | Maize | nucleus | 10.06 | 26.13 |
| Zm00001d009683_P004 | Maize | nucleus | 27.58 | 26.09 |
| CDX76544 | Canola | nucleus | 17.64 | 24.96 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 26.71 | 24.94 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 25.84 | 24.38 |
| CDY43361 | Canola | nucleus | 14.04 | 19.52 |
| CDY24202 | Canola | nucleus | 13.54 | 19.33 |
| CDY22126 | Canola | nucleus | 19.01 | 18.68 |
| CDY28028 | Canola | nucleus | 18.26 | 18.19 |
| CDY35953 | Canola | nucleus | 18.14 | 17.91 |
| CDX97535 | Canola | nucleus | 17.02 | 15.87 |
| CDY65326 | Canola | nucleus | 16.52 | 15.63 |
| CDY39087 | Canola | nucleus | 16.77 | 15.46 |
| CDY53767 | Canola | nucleus | 11.68 | 15.28 |
| CDY33258 | Canola | nucleus | 16.52 | 15.27 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 2.48 | 15.15 |
| CDY53764 | Canola | extracellular, vacuole | 7.33 | 13.59 |
Protein Annotations
| EnsemblPlants:CDX94662 | EnsemblPlantsGene:GSBRNA2T00157997001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | ProteinID:CDX94662 | ProteinID:CDX94662.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EE6EA6 | MapMan:35.2 | : | : |
Description
BnaC07g09960D
Coordinates
chrLK031883:-:897619..902345
Molecular Weight (calculated)
87326.5 Da
IEP (calculated)
5.888
GRAVY (calculated)
-0.950
Length
805 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSKASLG GGGRKGNNDI PSGCRKIVES LKEIVNSPEA EIYAMLKECN MDPNEAVHRL LSQDPFHEVK SKKEKKKESQ TRDIPDSRLR GANNAYNRGG
101: RGASNRYAGR NGSSHFSSTG SGNFQGKSTD KKESGTQGYT SSWPSASGVA NHHQTPHSDS VVTENKLPSA PSGDGVSSSQ SASGHQTAWF GAPGKMSMAD
201: IVKMGRPQSK TTNSQQNVNM RSEINHEQEV NANHQVPVKD EWPSIEKPPA PSTSSVSVAP AESEICSGPA DFQSDQHLSH RLGDIRLAEN GPSENLGGEH
301: DSVAGRNVQE DESGVSSEFN GNQYTYQTHS HRVEHHKDED EVSSGSAELQ QLTVDDQEAS HEEDRPAVLI PNHLLIHTKE CSQLSFGSFG SMTLSNNAEE
401: TPAVGQQVEH SDARNTEFYG DEQLGSRANG NMGHAPAAGS YDDSLESRPE VLKQENSETA QENQYAFAQS EPGYGKQQQL NTAYDDASQT NAQNQMQNLA
501: SLSNVMGYPH SVPNNLLAQN ARELDFQYAI AQSMQSRNNN NASPLGGQSI PMPEALRGSG VPATQPSQQT LPGGNMATGP ALPPQQLPMH PYSQPTMPLA
601: HFANMLGYPL MPQNYPYMPS AFPQTFAGNS LYQQQLAALL PQYKTNLSPS NLPHSATALN VGSAGNFPLN QHSTPPGTTM GYEDVLSSQY KESSHLLALQ
701: QQQQQNENSA MWHHGHGSRT MSGVPANTYY NLQAQQQLQQ AQQAAGGYRQ AQQQQHYGSQ GYPNYYQSQT EMSVDRQQQN PRDGAGAQAG SQPSNQTQQL
801: WQNSY
101: RGASNRYAGR NGSSHFSSTG SGNFQGKSTD KKESGTQGYT SSWPSASGVA NHHQTPHSDS VVTENKLPSA PSGDGVSSSQ SASGHQTAWF GAPGKMSMAD
201: IVKMGRPQSK TTNSQQNVNM RSEINHEQEV NANHQVPVKD EWPSIEKPPA PSTSSVSVAP AESEICSGPA DFQSDQHLSH RLGDIRLAEN GPSENLGGEH
301: DSVAGRNVQE DESGVSSEFN GNQYTYQTHS HRVEHHKDED EVSSGSAELQ QLTVDDQEAS HEEDRPAVLI PNHLLIHTKE CSQLSFGSFG SMTLSNNAEE
401: TPAVGQQVEH SDARNTEFYG DEQLGSRANG NMGHAPAAGS YDDSLESRPE VLKQENSETA QENQYAFAQS EPGYGKQQQL NTAYDDASQT NAQNQMQNLA
501: SLSNVMGYPH SVPNNLLAQN ARELDFQYAI AQSMQSRNNN NASPLGGQSI PMPEALRGSG VPATQPSQQT LPGGNMATGP ALPPQQLPMH PYSQPTMPLA
601: HFANMLGYPL MPQNYPYMPS AFPQTFAGNS LYQQQLAALL PQYKTNLSPS NLPHSATALN VGSAGNFPLN QHSTPPGTTM GYEDVLSSQY KESSHLLALQ
701: QQQQQNENSA MWHHGHGSRT MSGVPANTYY NLQAQQQLQQ AQQAAGGYRQ AQQQQHYGSQ GYPNYYQSQT EMSVDRQQQN PRDGAGAQAG SQPSNQTQQL
801: WQNSY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.