Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72379 | Canola | cytosol, nucleus, plastid | 26.27 | 86.36 |
| Bra038015.1-P | Field mustard | nucleus | 87.56 | 62.4 |
| CDY53767 | Canola | nucleus | 85.02 | 60.0 |
| AT1G55820.1 | Thale cress | nucleus | 69.12 | 52.17 |
| CDY24202 | Canola | nucleus | 28.8 | 22.16 |
| CDY43361 | Canola | nucleus | 29.26 | 21.93 |
| CDY28028 | Canola | nucleus | 24.42 | 13.12 |
| CDY22126 | Canola | nucleus | 24.42 | 12.94 |
| CDY35953 | Canola | nucleus | 23.96 | 12.76 |
| CDX99817 | Canola | nucleus | 13.13 | 9.19 |
| CDX78828 | Canola | nucleus | 14.52 | 9.03 |
| CDX76544 | Canola | nucleus | 11.29 | 8.61 |
| CDY61669 | Canola | nucleus | 13.59 | 7.97 |
| CDY08888 | Canola | nucleus | 10.6 | 7.97 |
| CDY65326 | Canola | nucleus | 15.44 | 7.87 |
| CDX97535 | Canola | nucleus | 15.44 | 7.76 |
| CDY61562 | Canola | nucleus | 13.36 | 7.61 |
| CDX84653 | Canola | nucleus | 13.82 | 7.38 |
| CDY15632 | Canola | nucleus | 13.36 | 7.38 |
| CDX94662 | Canola | nucleus | 13.59 | 7.33 |
| CDY48333 | Canola | nucleus | 13.82 | 7.29 |
| CDY43685 | Canola | nucleus | 13.59 | 7.11 |
| CDY33258 | Canola | nucleus | 14.06 | 7.0 |
| CDY43334 | Canola | nucleus | 13.13 | 6.93 |
| CDY39087 | Canola | nucleus | 13.82 | 6.87 |
| CDX90188 | Canola | nucleus | 12.67 | 6.69 |
| CDY61561 | Canola | cytosol | 0.92 | 6.06 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 9.22 | 5.97 |
| CDY11787 | Canola | nucleus | 9.91 | 5.83 |
| Os09t0261400-01 | Rice | plasma membrane | 0.92 | 5.0 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 0.69 | 3.37 |
Protein Annotations
| EnsemblPlants:CDY53764 | EnsemblPlantsGene:GSBRNA2T00011349001 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF30 | ProteinID:CDY53764 | ProteinID:CDY53764.1 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EDD0C8 | UniProt:A0A078IWK4 | MapMan:35.1 | : |
Description
BnaCnng25560DBnaCnng25560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWK4]
Coordinates
chrLK033234:-:61105..63564
Molecular Weight (calculated)
45980.1 Da
IEP (calculated)
5.110
GRAVY (calculated)
-0.406
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MHNFLLFIHL CLVPAPTGLP SGVSNHKVED DFTATDPSLI SASHCSNHSD QVTENETASK KGKARSLLKS DVGERSHVTF PLHLQVAEEL QNGLTFGSFD
101: SNFVKELSST YGASGGDDSD FKSSHGTGDD ESDSSPTTNG IPAVASARGA SSYFEDDNGI PNSAPGAELV RHSNHTVPSG EDELREEALP NTQPHQIAYG
201: QEAPFSVFGL VPSFSALGQP LGNSNAPAMS LVSNPPGQSS IAAVSQQATN LFGQQYPPSF FPYGPYYPQF YMPPPYIHQF LGPNGIPQQS YFPPGAAIAA
301: PTHIAPVGDN ENPPTTNPSQ HASSTVVTHT PSATALNSIH SEERTSPMTG NAAAWIGQGL GNLQMSQMYN LALQGQPLGF PVVQAGHRGL MGIQTLTPLP
401: PSLTTTAMAE PIRHPNIAYQ QPQAAVTNRV DNNY
101: SNFVKELSST YGASGGDDSD FKSSHGTGDD ESDSSPTTNG IPAVASARGA SSYFEDDNGI PNSAPGAELV RHSNHTVPSG EDELREEALP NTQPHQIAYG
201: QEAPFSVFGL VPSFSALGQP LGNSNAPAMS LVSNPPGQSS IAAVSQQATN LFGQQYPPSF FPYGPYYPQF YMPPPYIHQF LGPNGIPQQS YFPPGAAIAA
301: PTHIAPVGDN ENPPTTNPSQ HASSTVVTHT PSATALNSIH SEERTSPMTG NAAAWIGQGL GNLQMSQMYN LALQGQPLGF PVVQAGHRGL MGIQTLTPLP
401: PSLTTTAMAE PIRHPNIAYQ QPQAAVTNRV DNNY
001: MSSSDGGSSR VSIPYHLRKT LQKIREYTGK QHSDEDIFAV YKDSFNDPHE TAQKLLFLDT FHEVRSKREK KKEPIVPVTQ PSGRGGRRNF ASSNSYQGSG
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
Arabidopsis Description
GIP1LGBF-interacting protein 1-like [Source:UniProtKB/Swiss-Prot;Acc:A4FVR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.