Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021524.1-P | Field mustard | nucleus | 97.25 | 97.47 |
| CDY33258 | Canola | nucleus | 95.65 | 95.87 |
| CDY65326 | Canola | nucleus | 76.86 | 78.85 |
| CDX97535 | Canola | nucleus | 77.89 | 78.79 |
| AT3G13990.1 | Thale cress | nucleus | 72.62 | 74.76 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 16.49 | 56.25 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 47.65 | 51.42 |
| KRH47571 | Soybean | nucleus | 48.22 | 48.78 |
| KRH06147 | Soybean | nucleus | 47.31 | 48.02 |
| Solyc12g049230.1.1 | Tomato | nucleus | 41.58 | 46.01 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 35.62 | 36.63 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 29.55 | 33.33 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 30.24 | 30.48 |
| EER88029 | Sorghum | nucleus | 29.78 | 30.27 |
| Os06t0206100-01 | Rice | nucleus | 29.32 | 29.98 |
| Zm00001d044979_P010 | Maize | nucleus | 29.21 | 29.93 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 29.78 | 29.92 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 29.44 | 29.81 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 30.01 | 29.57 |
| Zm00001d037122_P009 | Maize | nucleus | 28.41 | 28.84 |
| CDY61561 | Canola | cytosol | 2.18 | 28.79 |
| KXG39164 | Sorghum | nucleus | 24.97 | 27.81 |
| Os03t0411000-01 | Rice | nucleus | 24.4 | 27.63 |
| Zm00001d029487_P001 | Maize | nucleus | 23.02 | 27.24 |
| CDY28028 | Canola | nucleus | 17.53 | 18.94 |
| CDY22126 | Canola | nucleus | 17.53 | 18.68 |
| CDY35953 | Canola | nucleus | 17.41 | 18.65 |
| CDY24202 | Canola | nucleus | 11.68 | 18.09 |
| CDX78828 | Canola | nucleus | 14.43 | 18.05 |
| CDY43361 | Canola | nucleus | 11.68 | 17.62 |
| CDY08888 | Canola | nucleus | 11.57 | 17.5 |
| CDY43334 | Canola | nucleus | 16.27 | 17.27 |
| CDY61669 | Canola | nucleus | 14.55 | 17.16 |
| CDX90188 | Canola | nucleus | 16.15 | 17.15 |
| CDY15632 | Canola | nucleus | 15.35 | 17.05 |
| CDX94662 | Canola | nucleus | 15.46 | 16.77 |
| CDY43685 | Canola | nucleus | 15.92 | 16.75 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 2.52 | 16.67 |
| CDX76544 | Canola | nucleus | 10.77 | 16.52 |
| CDX84653 | Canola | nucleus | 15.35 | 16.48 |
| CDY61562 | Canola | nucleus | 13.86 | 15.88 |
| CDY48333 | Canola | nucleus | 14.89 | 15.8 |
| CDY53767 | Canola | nucleus | 10.77 | 15.28 |
| CDY53764 | Canola | extracellular, vacuole | 6.87 | 13.82 |
| CDX99817 | Canola | nucleus | 9.51 | 13.39 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 9.39 | 12.24 |
| CDY11787 | Canola | nucleus | 7.67 | 9.09 |
Protein Annotations
| EnsemblPlants:CDY39087 | EnsemblPlantsGene:GSBRNA2T00067241001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 | ProteinID:CDY39087 | ProteinID:CDY39087.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EF46FC | UniProt:A0A078HMH3 | MapMan:35.2 | : |
Description
BnaA01g29690DBnaA01g29690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMH3]
Coordinates
chrLK032440:-:79003..83476
Molecular Weight (calculated)
94906.1 Da
IEP (calculated)
7.907
GRAVY (calculated)
-0.853
Length
873 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSESRTGGN RATGPDDDEE ERKVIESIKE IVGNHSDADI YTALKESDMN ADEAVQKLIH QDPFHEVKRR KDRKKEDAVL VEPANVKKPL ESVTSEVKIR
101: TQPEHNVRRG GYSRNAFPRN AAPQDAFPRK PLESVTSEVR VRTQPEHNVR RGGYSRNVFS RNAAPRNAFS RNPATGSKRE FRVVRDNRSN PNANEELKHS
201: TAQSPASNIS KVVTTENKKG STGGLGNHHS SGAQGFAEDC KAAADVRPRD SEIAPLHHPT RKGELSDGKE TSRGVTLPST DSVSSSTDPV HVPSPVSRSS
301: PVGAIKREVR GGGFGGKTSE AIGKDPSAGA LSKIGTPNAY RSSSPNSKKD QVSQTTPRES VLPSGLEKNR PLLNRQRGNR GGQYARTQQV GGHTKGILQN
401: MEWKPKSIQK PVEHNPGVIG TPTKSQACRP ADNITNLESE AVKLQDKLSH VHISETQNVI IADHIRLPET DRCQLTFGSF VQEFSSSMNS EPAAFQESCS
501: SEELRDSDRS SPVTAPETLA DGPGVKPIDI LNDHLRISES DSRVSVPSEQ LLPEEKEAHR SDNLDEYSEM LKNSDTLVPF QQAYGNHGSY DFPYFSQTID
601: ENSRGQGLPS QQEQASGTHM VNNAPPSTIP MLQQQQQQQQ GSMQQMYPQV HVSHFPSLMP YRQFVSPVYV PQMPMPGYSG NPAAYAHPSS GNSYVLMPGG
701: GSHPGSNGAK YGIQQFKPVP GGPTGFGTYN SPNGYQINPP NVVGNGMGLE DPSRMKYKDG NIYVPNPQAE TSEIWMQNPR DLSNLQSPPY YNVAGQTPHG
801: AYLPSHTPHP SFNAPAAATQ SSQMQFQGLF HPPQPGTMAN LHHMGPGLGG NVGVGVVPSP PSQLGHPSWA ANF
101: TQPEHNVRRG GYSRNAFPRN AAPQDAFPRK PLESVTSEVR VRTQPEHNVR RGGYSRNVFS RNAAPRNAFS RNPATGSKRE FRVVRDNRSN PNANEELKHS
201: TAQSPASNIS KVVTTENKKG STGGLGNHHS SGAQGFAEDC KAAADVRPRD SEIAPLHHPT RKGELSDGKE TSRGVTLPST DSVSSSTDPV HVPSPVSRSS
301: PVGAIKREVR GGGFGGKTSE AIGKDPSAGA LSKIGTPNAY RSSSPNSKKD QVSQTTPRES VLPSGLEKNR PLLNRQRGNR GGQYARTQQV GGHTKGILQN
401: MEWKPKSIQK PVEHNPGVIG TPTKSQACRP ADNITNLESE AVKLQDKLSH VHISETQNVI IADHIRLPET DRCQLTFGSF VQEFSSSMNS EPAAFQESCS
501: SEELRDSDRS SPVTAPETLA DGPGVKPIDI LNDHLRISES DSRVSVPSEQ LLPEEKEAHR SDNLDEYSEM LKNSDTLVPF QQAYGNHGSY DFPYFSQTID
601: ENSRGQGLPS QQEQASGTHM VNNAPPSTIP MLQQQQQQQQ GSMQQMYPQV HVSHFPSLMP YRQFVSPVYV PQMPMPGYSG NPAAYAHPSS GNSYVLMPGG
701: GSHPGSNGAK YGIQQFKPVP GGPTGFGTYN SPNGYQINPP NVVGNGMGLE DPSRMKYKDG NIYVPNPQAE TSEIWMQNPR DLSNLQSPPY YNVAGQTPHG
801: AYLPSHTPHP SFNAPAAATQ SSQMQFQGLF HPPQPGTMAN LHHMGPGLGG NVGVGVVPSP PSQLGHPSWA ANF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.