Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65326 | Canola | nucleus | 76.06 | 75.79 |
| CDX97535 | Canola | nucleus | 77.12 | 75.78 |
| CDY33258 | Canola | nucleus | 75.71 | 73.71 |
| Bra021524.1-P | Field mustard | nucleus | 75.12 | 73.13 |
| Bra027380.1-P | Field mustard | nucleus | 77.48 | 72.84 |
| CDY39087 | Canola | nucleus | 74.76 | 72.62 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 17.81 | 58.98 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 51.3 | 53.77 |
| KRH47571 | Soybean | nucleus | 51.18 | 50.29 |
| KRH06147 | Soybean | nucleus | 50.47 | 49.77 |
| Solyc12g049230.1.1 | Tomato | nucleus | 43.4 | 46.64 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 40.09 | 40.05 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 30.78 | 33.72 |
| EER88029 | Sorghum | nucleus | 32.78 | 32.36 |
| Os06t0206100-01 | Rice | nucleus | 32.55 | 32.32 |
| Zm00001d044979_P010 | Maize | nucleus | 31.72 | 31.57 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 31.96 | 31.29 |
| Zm00001d037122_P009 | Maize | nucleus | 31.72 | 31.28 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 31.49 | 30.97 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 31.72 | 30.96 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 31.72 | 30.36 |
| Os03t0411000-01 | Rice | nucleus | 26.77 | 29.44 |
| KXG39164 | Sorghum | nucleus | 26.18 | 28.32 |
| Zm00001d029487_P001 | Maize | nucleus | 24.17 | 27.78 |
| AT3G13222.1 | Thale cress | nucleus | 13.68 | 20.46 |
| AT3G07660.1 | Thale cress | nucleus | 20.28 | 20.45 |
| AT1G55820.1 | Thale cress | nucleus | 12.85 | 18.96 |
| AT1G29350.1 | Thale cress | nucleus | 16.04 | 16.37 |
| AT1G29370.1 | Thale cress | nucleus | 15.8 | 16.13 |
| AT4G18150.1 | Thale cress | nucleus | 14.15 | 15.83 |
| AT5G46380.2 | Thale cress | nucleus | 10.85 | 13.9 |
Protein Annotations
| MapMan:35.2 | EntrezGene:820613 | ProteinID:AEE75448.1 | ArrayExpress:AT3G13990 | EnsemblPlantsGene:AT3G13990 | RefSeq:AT3G13990 |
| TAIR:AT3G13990 | RefSeq:AT3G13990-TAIR-G | EnsemblPlants:AT3G13990.1 | TAIR:AT3G13990.1 | EMBL:AY127029 | Unigene:At.39308 |
| EMBL:BT000639 | ncoils:Coil | InterPro:GIP1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | RefSeq:NP_188015.2 | PFAM:PF06972 | PO:PO:0000005 |
| PO:PO:0000293 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | UniProt:Q8L7T4 | SUPFAM:SSF46934 | InterPro:UBA-like_sf |
| UniParc:UPI00000ABEEE | SEG:seg | : | : | : | : |
Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
Coordinates
chr3:-:4625383..4630613
Molecular Weight (calculated)
92302.0 Da
IEP (calculated)
8.849
GRAVY (calculated)
-0.859
Length
848 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.