Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 91.65 | 91.22 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 91.07 | 90.33 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 92.23 | 89.73 |
| EER88029 | Sorghum | nucleus | 69.26 | 69.5 |
| Zm00001d044979_P010 | Maize | nucleus | 68.21 | 69.01 |
| Os06t0206100-01 | Rice | nucleus | 68.21 | 68.85 |
| Zm00001d037122_P009 | Maize | nucleus | 67.75 | 67.91 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 14.85 | 50.0 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 37.82 | 40.3 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 37.35 | 37.93 |
| Solyc12g049230.1.1 | Tomato | nucleus | 34.34 | 37.52 |
| KRH47571 | Soybean | nucleus | 35.96 | 35.92 |
| KRH06147 | Soybean | nucleus | 35.73 | 35.81 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 29.7 | 33.07 |
| AT3G13990.1 | Thale cress | nucleus | 30.97 | 31.49 |
| CDY65326 | Canola | nucleus | 29.81 | 30.2 |
| CDX97535 | Canola | nucleus | 29.93 | 29.9 |
| CDY33258 | Canola | nucleus | 30.05 | 29.74 |
| Bra021524.1-P | Field mustard | nucleus | 29.93 | 29.62 |
| CDY39087 | Canola | nucleus | 29.81 | 29.44 |
| Bra027380.1-P | Field mustard | nucleus | 29.81 | 28.49 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 14.73 | 23.78 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 21.93 | 21.21 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 16.13 | 15.98 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 15.66 | 14.26 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 12.64 | 12.64 |
Protein Annotations
| MapMan:35.2 | UniProt:A0A287W0B2 | InterPro:GIP1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | EnsemblPlantsGene:HORVU7Hr1G034850 | EnsemblPlants:HORVU7Hr1G034850.1 | PFAM:PF06972 |
| PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | SUPFAM:SSF46934 | InterPro:UBA-like_sf | UniParc:UPI000B46C9BE | SEG:seg |
Description
No Description!
Coordinates
chrchr7H:+:74459532..74467551
Molecular Weight (calculated)
94199.2 Da
IEP (calculated)
6.834
GRAVY (calculated)
-0.901
Length
862 amino acids
Sequence
(BLAST)
(BLAST)
001: PFPFEPRTHQ AQPAPNPNHP AARAPPTAID STVQSIKEVV GGHSEADILD ALRESNMDPN ETAQKLLNQD PFHEVKRKRD KKRESAVQKN CTETTAQGEH
101: GTQRTKPHTQ RVEIDQRRAH NQGQTYGPTR EFRVVRDNRH NAVENGAVQH KVSTYMQASD RSGVVVQSDR NRPPPTTSEG QITHQSAKSS YNSDMHQMKR
201: DVQGTAQRHA RPYLKNSQNE HQYPNSDLPH ASFNYKIAGG SVRPNRREAG VANAPRQYSG RPGSQLHGPN DSYHANIQRG NFASAGPSVR RPAFMPRNIQ
301: PNHRPAADTV SRGRSVGRSF GNQNHSRYHQ GPANNQKVIQ PAKEWKPKST NKSSTNDTGN SGTNATSPLD SKAGNVNVLD VNSSCDKSSH ANVHEMEHVI
401: IPEHLRVPEY EQTRLRFGSF SPGFDSDQLQ TSTSSEPEQS EHVQESVQLV VQEDEFGTEH DEVDEPVGSQ LTTISTSAAE SSIPPSEDSE QMNGQEVEDD
501: DGLGLVQSDT PLGAADDHNI QSTSSLTAFS AYGHEDPNMH PNNEAQLYGL VEPNVHQQML ASSSQGYTSV NPGADNAVQV FRMPESSVHS QVLPSASEAL
601: SSQLASSSPI AMSTQQQHMS QQQQAAQMYP PMHVQHYPNF MPYRHPLYSP VYVPPMAMPN YSANVPYPAN GNNYLQMAGG GSHLTAGQVK YGVSQYKPVP
701: AGNPSGYGNY THPAGYTISS PGVIGAGVGV DDVNRMKYKD NNIYAPTPQV ETSDIWIQNR EIPTLQCPPY YNLSGQATPG AYMPNPGNAS FSATAQSSHA
801: QFPGMYHPQQ PPSIVSPHPM VHQQVPSAIG PNVGVGVAAP GPQVGAYQQQ QLGHMNWRQP NF
101: GTQRTKPHTQ RVEIDQRRAH NQGQTYGPTR EFRVVRDNRH NAVENGAVQH KVSTYMQASD RSGVVVQSDR NRPPPTTSEG QITHQSAKSS YNSDMHQMKR
201: DVQGTAQRHA RPYLKNSQNE HQYPNSDLPH ASFNYKIAGG SVRPNRREAG VANAPRQYSG RPGSQLHGPN DSYHANIQRG NFASAGPSVR RPAFMPRNIQ
301: PNHRPAADTV SRGRSVGRSF GNQNHSRYHQ GPANNQKVIQ PAKEWKPKST NKSSTNDTGN SGTNATSPLD SKAGNVNVLD VNSSCDKSSH ANVHEMEHVI
401: IPEHLRVPEY EQTRLRFGSF SPGFDSDQLQ TSTSSEPEQS EHVQESVQLV VQEDEFGTEH DEVDEPVGSQ LTTISTSAAE SSIPPSEDSE QMNGQEVEDD
501: DGLGLVQSDT PLGAADDHNI QSTSSLTAFS AYGHEDPNMH PNNEAQLYGL VEPNVHQQML ASSSQGYTSV NPGADNAVQV FRMPESSVHS QVLPSASEAL
601: SSQLASSSPI AMSTQQQHMS QQQQAAQMYP PMHVQHYPNF MPYRHPLYSP VYVPPMAMPN YSANVPYPAN GNNYLQMAGG GSHLTAGQVK YGVSQYKPVP
701: AGNPSGYGNY THPAGYTISS PGVIGAGVGV DDVNRMKYKD NNIYAPTPQV ETSDIWIQNR EIPTLQCPPY YNLSGQATPG AYMPNPGNAS FSATAQSSHA
801: QFPGMYHPQQ PPSIVSPHPM VHQQVPSAIG PNVGVGVAAP GPQVGAYQQQ QLGHMNWRQP NF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.