Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88029 | Sorghum | nucleus | 90.93 | 91.04 |
| Zm00001d044979_P010 | Maize | nucleus | 89.07 | 89.91 |
| Os06t0206100-01 | Rice | nucleus | 67.79 | 68.27 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 68.37 | 67.9 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 67.91 | 67.75 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 67.33 | 66.63 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 68.37 | 66.37 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 14.07 | 47.27 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 36.74 | 39.06 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 37.79 | 38.28 |
| Solyc12g049230.1.1 | Tomato | nucleus | 33.6 | 36.63 |
| KRH47571 | Soybean | nucleus | 36.51 | 36.38 |
| KRH06147 | Soybean | nucleus | 35.81 | 35.81 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 30.35 | 33.72 |
| AT3G13990.1 | Thale cress | nucleus | 31.28 | 31.72 |
| CDY65326 | Canola | nucleus | 30.0 | 30.32 |
| CDX97535 | Canola | nucleus | 30.12 | 30.01 |
| CDY33258 | Canola | nucleus | 29.65 | 29.28 |
| Bra021524.1-P | Field mustard | nucleus | 29.3 | 28.93 |
| Bra027380.1-P | Field mustard | nucleus | 30.23 | 28.82 |
| Zm00001d029487_P001 | Maize | nucleus | 24.42 | 28.46 |
| CDY39087 | Canola | nucleus | 28.84 | 28.41 |
| Zm00001d035703_P001 | Maize | nucleus | 6.98 | 22.22 |
| Zm00001d017358_P001 | Maize | nucleus | 2.79 | 21.82 |
| Zm00001d050112_P011 | Maize | nucleus | 20.58 | 20.9 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 3.02 | 16.99 |
| Zm00001d043962_P001 | Maize | nucleus | 16.4 | 16.75 |
| Zm00001d009591_P006 | Maize | nucleus | 16.4 | 16.45 |
| Zm00001d011517_P002 | Maize | nucleus | 15.81 | 16.19 |
| Zm00001d039041_P007 | Maize | nucleus | 16.05 | 15.3 |
| Zm00001d004950_P001 | Maize | nucleus | 5.35 | 14.84 |
| Zm00001d039138_P012 | Maize | nucleus | 13.49 | 13.99 |
| Zm00001d009683_P004 | Maize | nucleus | 13.14 | 13.28 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 2.91 | 11.16 |
| Zm00001d050118_P001 | Maize | mitochondrion | 3.95 | 8.1 |
Protein Annotations
| EnsemblPlants:Zm00001d037122_P009 | EnsemblPlants:Zm00001d037122_T009 | EnsemblPlantsGene:Zm00001d037122 | EntrezGene:100382099 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 |
| ProteinID:AQK83053.1 | SEG:seg | SUPFAM:SSF46934 | UniParc:UPI000842CB89 | UniProt:A0A1D6LUQ3 | MapMan:35.2 |
Description
Putative DUF1296 domain containing family protein
Coordinates
chr6:+:113159413..113167233
Molecular Weight (calculated)
93179.4 Da
IEP (calculated)
6.633
GRAVY (calculated)
-0.788
Length
860 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVGGGARS SDRAGAARSP TTTTTTTTTA IQSTIQSIKE VVVGHSDADI LDTLRESNMD PNETAQKLLN QVADPFHEVK RKRDKKKESA GQKSFADSTG
101: QVDQNPQWMR PHTHRMENDQ RRLPNQGQMS GPSHEFRVVR DNRFQHGVVE NRPEPGHKGS ADVQMSDRST VVQSARNLSP ATTSDGQITH QNAMQNSQSD
201: ITQGKRDGQG TTQKHAKPYL KNSQNEQHFP GSDPAHGSAT VRIAGGTVGP TRRHVGVINS SRQFVGRSGS QMHAPGGSSY ANIQRGSFTS VGASGRYSAF
301: MSRNIQQNLR ADTTFRGRPT GRSFIAQNVN RYHQGPTTNQ KAVHPIKEWK PKLTKKSPTI DAENSIADAA SPSASNCENA NTTDVNGLPE KLSQANLHEV
401: EHVIIPEHLR VPEYEQTKLR FGSFTPDLDL EQVPDLTPQD TEQPEHVQEP VQQVSEGDSL DDGHDDMDEQ ARSSQHLSSS TAEISLSPSE DSDQMSGQVE
501: NDDGLGLVQS DTPVGAADGD STQITSTLTA FSAYGHKDPN IHTTNEAQLY GLVEPNVHPQ ALASSSQGYP SENPEADNAV QVFRMPDSNV HSQVLPSTSE
601: ALNPQIVSNS PVPISSQQQH ISQQQAATQM YPQMHVQHFP NFMPYRQLYS PVYPMPMPNY SPNVPYPSNG NSYLQMPSGG SHLTAGSVKY GVSQYKPVPS
701: GNPSGYGNYT HPAGFTMGSP GVIGAAVGVD DVNRMKYKDN IYASTPQVET SDIWIQTARE MPPLQVPSYY NIPGQATPGA FVPNPANASF NATSQSPHAQ
801: FPGLYHPQQP PSIVSPHPMV HQQVPSAIGP NVGVGVAAPG PQVGAYQQRQ IGHMNWRPSF
101: QVDQNPQWMR PHTHRMENDQ RRLPNQGQMS GPSHEFRVVR DNRFQHGVVE NRPEPGHKGS ADVQMSDRST VVQSARNLSP ATTSDGQITH QNAMQNSQSD
201: ITQGKRDGQG TTQKHAKPYL KNSQNEQHFP GSDPAHGSAT VRIAGGTVGP TRRHVGVINS SRQFVGRSGS QMHAPGGSSY ANIQRGSFTS VGASGRYSAF
301: MSRNIQQNLR ADTTFRGRPT GRSFIAQNVN RYHQGPTTNQ KAVHPIKEWK PKLTKKSPTI DAENSIADAA SPSASNCENA NTTDVNGLPE KLSQANLHEV
401: EHVIIPEHLR VPEYEQTKLR FGSFTPDLDL EQVPDLTPQD TEQPEHVQEP VQQVSEGDSL DDGHDDMDEQ ARSSQHLSSS TAEISLSPSE DSDQMSGQVE
501: NDDGLGLVQS DTPVGAADGD STQITSTLTA FSAYGHKDPN IHTTNEAQLY GLVEPNVHPQ ALASSSQGYP SENPEADNAV QVFRMPDSNV HSQVLPSTSE
601: ALNPQIVSNS PVPISSQQQH ISQQQAATQM YPQMHVQHFP NFMPYRQLYS PVYPMPMPNY SPNVPYPSNG NSYLQMPSGG SHLTAGSVKY GVSQYKPVPS
701: GNPSGYGNYT HPAGFTMGSP GVIGAAVGVD DVNRMKYKDN IYASTPQVET SDIWIQTARE MPPLQVPSYY NIPGQATPGA FVPNPANASF NATSQSPHAQ
801: FPGLYHPQQP PSIVSPHPMV HQQVPSAIGP NVGVGVAAPG PQVGAYQQRQ IGHMNWRPSF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.