Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 20.91 | 64.45 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 60.08 | 58.59 |
| KRH47571 | Soybean | nucleus | 58.17 | 53.19 |
| KRH06147 | Soybean | nucleus | 57.29 | 52.56 |
| AT3G13990.1 | Thale cress | nucleus | 46.64 | 43.4 |
| CDX97535 | Canola | nucleus | 46.26 | 42.29 |
| CDY65326 | Canola | nucleus | 45.37 | 42.07 |
| CDY39087 | Canola | nucleus | 46.01 | 41.58 |
| Bra021524.1-P | Field mustard | nucleus | 45.88 | 41.56 |
| CDY33258 | Canola | nucleus | 45.5 | 41.22 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 43.85 | 40.75 |
| Bra027380.1-P | Field mustard | nucleus | 46.13 | 40.35 |
| EER88029 | Sorghum | nucleus | 37.64 | 34.58 |
| Os06t0206100-01 | Rice | nucleus | 37.39 | 34.54 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 37.9 | 34.53 |
| Zm00001d044979_P010 | Maize | nucleus | 37.26 | 34.51 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 37.52 | 34.34 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 33.59 | 34.24 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 37.14 | 33.72 |
| Zm00001d037122_P009 | Maize | nucleus | 36.63 | 33.6 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 37.52 | 33.41 |
| Os03t0411000-01 | Rice | nucleus | 32.32 | 33.07 |
| Zm00001d029487_P001 | Maize | nucleus | 29.4 | 31.44 |
| KXG39164 | Sorghum | nucleus | 31.05 | 31.25 |
| Solyc05g018750.2.1 | Tomato | nucleus | 24.33 | 23.53 |
| Solyc07g045230.2.1 | Tomato | nucleus | 23.95 | 21.58 |
| Solyc02g071180.2.1 | Tomato | nucleus | 18.38 | 17.41 |
| Solyc03g005750.2.1 | Tomato | nucleus | 18.38 | 17.2 |
| Solyc09g018250.2.1 | Tomato | plastid | 2.28 | 16.98 |
Protein Annotations
| MapMan:35.2 | ncoils:Coil | InterPro:GIP1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | UniProt:K4DFK4 | PFAM:PF06972 | PANTHER:PTHR12758 |
| PANTHER:PTHR12758:SF28 | SUPFAM:SSF46934 | EnsemblPlantsGene:Solyc12g049230.1 | EnsemblPlants:Solyc12g049230.1.1 | InterPro:UBA-like_sf | UniParc:UPI00027699E3 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:37234585..37246029
Molecular Weight (calculated)
85331.7 Da
IEP (calculated)
8.641
GRAVY (calculated)
-0.747
Length
789 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSSKSESG THVISVGVRE ILESIKEVVG NHSDADIYVT LKETNMDPNE TAQKLLNQDP FHKVKRKGDR RKENHGYKSS TAPENGNYLE HDAHEMRINT
101: HINRNIRRGS YNRTALPDAG LTREFRVVRD NRVNQNVNRV VKAVQTSTSA EPAISNTSAQ SSSKGTSSNT LSTGSRSSQA RNRNSQHTHS NDANLSSTNG
201: QDPVHVPSLD SRPTAKVGAI RREVGVVGAR RQSAETFAKS SSSQSRSSSN SHMEQARQDI GNSKGSLRPM SSNSRSDQSG VSDSPKSNLP MSKSLSGNQH
301: INRLHHSVGH QKGVQWKPKL TKKSSVTDPG VIGKPSEGVY LTSKSEDLEK EGSQLQDKMS RLNISENVII AEHIRVSETD RCRLTFGSFG AEFKSAKDLE
401: EESQTKSSRL SVLVSESSTD DPVGSKQLDL ADDHVQNPES TSPVSDVISD QKLSDNRESS SPEDLGNYAD VGLVQDKSAS YTPPESQQQQ NASNLSSFSA
501: YDPQTGYDIP YFRPAVDEAL RDQGLQEALS SHAANSMPVS SIPMVQQVQQ HQPIAQMYPQ VHVSHYANLM PYRHVFSPVY VPPMAMPGYS SNAAYPHPPN
601: GSNYLLMPGG GSHLSANGLK YGIQQFKPVP TGSASGFGNF TSPTGYAINT PGVIGSATGL KDSSRMKYKD GNLYVPNPQA ETSEMWMNPR DISIMQSGSY
701: YSMSGQTPHA TYLPSHSGHA SFNAAAPSSH MQFSGLYHPP QPAAMANPHH MGSAMAGNVG VGMAAAAPGA QVGAYQQPQL GHLNWTGNF
101: HINRNIRRGS YNRTALPDAG LTREFRVVRD NRVNQNVNRV VKAVQTSTSA EPAISNTSAQ SSSKGTSSNT LSTGSRSSQA RNRNSQHTHS NDANLSSTNG
201: QDPVHVPSLD SRPTAKVGAI RREVGVVGAR RQSAETFAKS SSSQSRSSSN SHMEQARQDI GNSKGSLRPM SSNSRSDQSG VSDSPKSNLP MSKSLSGNQH
301: INRLHHSVGH QKGVQWKPKL TKKSSVTDPG VIGKPSEGVY LTSKSEDLEK EGSQLQDKMS RLNISENVII AEHIRVSETD RCRLTFGSFG AEFKSAKDLE
401: EESQTKSSRL SVLVSESSTD DPVGSKQLDL ADDHVQNPES TSPVSDVISD QKLSDNRESS SPEDLGNYAD VGLVQDKSAS YTPPESQQQQ NASNLSSFSA
501: YDPQTGYDIP YFRPAVDEAL RDQGLQEALS SHAANSMPVS SIPMVQQVQQ HQPIAQMYPQ VHVSHYANLM PYRHVFSPVY VPPMAMPGYS SNAAYPHPPN
601: GSNYLLMPGG GSHLSANGLK YGIQQFKPVP TGSASGFGNF TSPTGYAINT PGVIGSATGL KDSSRMKYKD GNLYVPNPQA ETSEMWMNPR DISIMQSGSY
701: YSMSGQTPHA TYLPSHSGHA SFNAAAPSSH MQFSGLYHPP QPAAMANPHH MGSAMAGNVG VGMAAAAPGA QVGAYQQPQL GHLNWTGNF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.