Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007972 | Potato | nucleus | 95.8 | 95.45 |
| Solyc09g018250.2.1 | Tomato | plastid | 8.88 | 69.81 |
| CDY61561 | Canola | cytosol | 5.52 | 69.7 |
| Solyc03g005750.2.1 | Tomato | nucleus | 70.11 | 69.28 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.64 | 59.49 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 60.02 | 57.41 |
| KRH42968 | Soybean | nucleus | 52.22 | 51.97 |
| KRH59101 | Soybean | nucleus | 52.46 | 51.72 |
| KRH36716 | Soybean | nucleus | 51.26 | 50.95 |
| KRH11725 | Soybean | nucleus | 50.66 | 50.24 |
| Zm00001d017358_P001 | Maize | nucleus | 6.48 | 49.09 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 12.36 | 48.58 |
| Zm00001d035703_P001 | Maize | nucleus | 15.73 | 48.52 |
| Bra022970.1-P | Field mustard | nucleus | 45.74 | 47.1 |
| AT1G29370.1 | Thale cress | nucleus | 46.34 | 46.45 |
| CDX84653 | Canola | nucleus | 45.26 | 46.37 |
| AT1G29350.1 | Thale cress | nucleus | 46.22 | 46.33 |
| CDX94662 | Canola | nucleus | 44.06 | 45.59 |
| Bra021900.1-P | Field mustard | nucleus | 44.9 | 45.55 |
| CDY15632 | Canola | nucleus | 42.98 | 45.55 |
| CDX90188 | Canola | nucleus | 44.78 | 45.38 |
| CDY48333 | Canola | nucleus | 44.78 | 45.32 |
| Bra030134.1-P | Field mustard | nucleus | 42.5 | 45.27 |
| CDY43334 | Canola | nucleus | 44.66 | 45.26 |
| CDX99817 | Canola | nucleus | 33.49 | 45.0 |
| CDY43685 | Canola | nucleus | 44.78 | 44.94 |
| Bra010832.1-P | Field mustard | nucleus | 44.3 | 44.89 |
| CDY61562 | Canola | nucleus | 40.34 | 44.09 |
| Bra032310.1-P | Field mustard | nucleus | 44.42 | 43.07 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 42.62 | 42.52 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 7.68 | 41.83 |
| CDY61669 | Canola | nucleus | 36.61 | 41.22 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 40.7 | 39.93 |
| Bra013287.1-P | Field mustard | nucleus | 36.73 | 39.23 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 31.45 | 39.1 |
| KXG33052 | Sorghum | nucleus | 38.54 | 39.0 |
| CDX78828 | Canola | nucleus | 32.41 | 38.68 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 40.7 | 38.61 |
| Os05t0566900-01 | Rice | extracellular | 39.38 | 38.5 |
| Zm00001d011517_P002 | Maize | nucleus | 38.3 | 37.98 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 41.3 | 37.8 |
| Os01t0663800-01 | Rice | plasma membrane | 38.42 | 37.6 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 38.06 | 37.51 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 39.02 | 37.49 |
| AT4G18150.1 | Thale cress | nucleus | 34.09 | 37.47 |
| Zm00001d043962_P001 | Maize | nucleus | 37.82 | 37.41 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 39.02 | 37.36 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 39.14 | 37.34 |
| KXG22544 | Sorghum | nucleus | 38.18 | 37.15 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 37.33 | 36.89 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 36.01 | 36.85 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 38.3 | 36.67 |
| Zm00001d009591_P006 | Maize | nucleus | 35.65 | 34.66 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 39.26 | 34.53 |
| Zm00001d039041_P007 | Maize | nucleus | 36.85 | 34.04 |
| Zm00001d039138_P012 | Maize | nucleus | 33.13 | 33.29 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 33.13 | 32.66 |
| KXG22612 | Sorghum | nucleus | 32.53 | 32.57 |
| Zm00001d004950_P001 | Maize | nucleus | 12.0 | 32.26 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 32.65 | 31.92 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 8.4 | 31.25 |
| Os05t0581800-01 | Rice | nucleus | 31.69 | 30.99 |
| Zm00001d009683_P004 | Maize | nucleus | 31.33 | 30.67 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 29.65 | 28.96 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 29.65 | 28.65 |
| CDY11787 | Canola | nucleus | 25.21 | 28.49 |
| CDY08888 | Canola | nucleus | 19.45 | 28.08 |
| CDX76544 | Canola | nucleus | 18.61 | 27.24 |
| Bra021022.1-P | Field mustard | nucleus | 19.21 | 25.76 |
| AT5G46380.2 | Thale cress | nucleus | 19.33 | 24.32 |
| Solyc05g018750.2.1 | Tomato | nucleus | 20.65 | 21.08 |
| Solyc07g045230.2.1 | Tomato | nucleus | 21.37 | 20.32 |
| Solyc12g049230.1.1 | Tomato | nucleus | 17.41 | 18.38 |
Protein Annotations
| EnsemblPlants:Solyc02g071180.2.1 | EnsemblPlantsGene:Solyc02g071180.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| UniParc:UPI0002768BFE | UniProt:K4B894 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2:-:40662689..40671056
Molecular Weight (calculated)
88867.5 Da
IEP (calculated)
5.684
GRAVY (calculated)
-0.715
Length
833 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRNNGGVG VQSIPAGSRK MVQSLKEIVN CPEPEIYAML KECNMDPNEA VNRLLTQDTF HEVKSKREKR KESKDTTESR PRGAISNSGR GSRGGAERYV
101: GRGGSAESTK LIPGYRKDNG SKTSNLTSTL GVSGISRRAT TISDIAANES KKSAPAAVDG VSSVSQHETS SGYQPTWGGV PGQVSMADIV KMGRPQSKVP
201: SAPSVSHHNV NAEQNHIQGL PSGASHQNTQ WSDDHTTKIS EVHREPQHLS TDEEWPLIEP PSVASQTSIS EPPADSELHP DPTNMSYDRI NHQNEIDEVQ
301: GTDNCTIENL GSPSSRRLQE DNAGGASIYE NDLYGYQNQN HTFDHQQAED VNNSVSSVSA NLQQLNVQDD GGVPPEGDGP SVVIPDHLQV QTADCSHLSF
401: GSFGSGIGGS FSGPLASAPV TSTLEDAPKE VDGSSVGHLG SRASEYYGDE SLRHASESNL YHRTNASSVN YDSPASQPEP LKSETNEQGN QYSYPSSAAG
501: YTYESAQQLT AAFSQPQTSS QMQNLTPFSN VMAFTNSLPS TLLAANAHAG RETDLSYLPF SATQAMAMKY GSSVSSIGGS TISMPESLKG AGFPSAQPTQ
601: QPLSGTSVTT GPTVPQHLAV HPYNQPPLGP FANMIGYPFL PQSYTYMPSA FQQPFAGNSN YHQSLAAVLP QYKNSVSVSS LPQPASVASA YGGFGNTASI
701: PGNFPMNPPA APSGTNLSYD DVLSSQYKDT NHLMSLQQSE NSAMWHGPGS RTMSAVPANT YYGFQGQNQQ SSGFRQAQQP LQNHGSLGYP NFYHSQAGIS
801: LEHQQQNPRD GSLGGGSQGQ PKQFQQLWQS GGY
101: GRGGSAESTK LIPGYRKDNG SKTSNLTSTL GVSGISRRAT TISDIAANES KKSAPAAVDG VSSVSQHETS SGYQPTWGGV PGQVSMADIV KMGRPQSKVP
201: SAPSVSHHNV NAEQNHIQGL PSGASHQNTQ WSDDHTTKIS EVHREPQHLS TDEEWPLIEP PSVASQTSIS EPPADSELHP DPTNMSYDRI NHQNEIDEVQ
301: GTDNCTIENL GSPSSRRLQE DNAGGASIYE NDLYGYQNQN HTFDHQQAED VNNSVSSVSA NLQQLNVQDD GGVPPEGDGP SVVIPDHLQV QTADCSHLSF
401: GSFGSGIGGS FSGPLASAPV TSTLEDAPKE VDGSSVGHLG SRASEYYGDE SLRHASESNL YHRTNASSVN YDSPASQPEP LKSETNEQGN QYSYPSSAAG
501: YTYESAQQLT AAFSQPQTSS QMQNLTPFSN VMAFTNSLPS TLLAANAHAG RETDLSYLPF SATQAMAMKY GSSVSSIGGS TISMPESLKG AGFPSAQPTQ
601: QPLSGTSVTT GPTVPQHLAV HPYNQPPLGP FANMIGYPFL PQSYTYMPSA FQQPFAGNSN YHQSLAAVLP QYKNSVSVSS LPQPASVASA YGGFGNTASI
701: PGNFPMNPPA APSGTNLSYD DVLSSQYKDT NHLMSLQQSE NSAMWHGPGS RTMSAVPANT YYGFQGQNQQ SSGFRQAQQP LQNHGSLGYP NFYHSQAGIS
801: LEHQQQNPRD GSLGGGSQGQ PKQFQQLWQS GGY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.