Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G241400.3 | Wheat | nucleus | 93.83 | 97.17 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 96.56 | 96.33 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 92.29 | 89.43 |
| KXG33052 | Sorghum | nucleus | 69.04 | 70.72 |
| Zm00001d035703_P001 | Maize | nucleus | 22.54 | 70.37 |
| Os01t0663800-01 | Rice | plasma membrane | 70.34 | 69.68 |
| Zm00001d043962_P001 | Maize | nucleus | 68.92 | 69.0 |
| Zm00001d017358_P001 | Maize | nucleus | 8.9 | 68.18 |
| Zm00001d011517_P002 | Maize | nucleus | 67.62 | 67.86 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 59.55 | 57.7 |
| KRH38470 | Soybean | endoplasmic reticulum | 5.22 | 55.7 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 9.73 | 53.59 |
| Zm00001d004950_P001 | Maize | nucleus | 18.15 | 49.35 |
| Solyc09g018250.2.1 | Tomato | plastid | 5.81 | 46.23 |
| CDY61561 | Canola | cytosol | 3.56 | 45.45 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 43.77 | 44.19 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 41.99 | 41.7 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 42.94 | 39.78 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 41.16 | 39.52 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 40.09 | 38.81 |
| PGSC0003DMT400007972 | Potato | nucleus | 37.49 | 37.8 |
| Solyc02g071180.2.1 | Tomato | nucleus | 36.89 | 37.33 |
| KRH59101 | Soybean | nucleus | 36.65 | 36.57 |
| KRH42968 | Soybean | nucleus | 36.3 | 36.56 |
| Solyc03g005750.2.1 | Tomato | nucleus | 36.18 | 36.18 |
| KRH36716 | Soybean | nucleus | 35.94 | 36.16 |
| KRH11725 | Soybean | nucleus | 35.35 | 35.48 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 8.78 | 34.91 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 34.28 | 33.92 |
| Bra030134.1-P | Field mustard | nucleus | 31.32 | 33.76 |
| CDY48333 | Canola | nucleus | 32.62 | 33.41 |
| CDY43334 | Canola | nucleus | 32.38 | 33.21 |
| AT1G29370.1 | Thale cress | nucleus | 32.62 | 33.09 |
| CDX90188 | Canola | nucleus | 32.27 | 33.09 |
| CDY15632 | Canola | nucleus | 30.61 | 32.82 |
| AT1G29350.1 | Thale cress | nucleus | 32.27 | 32.73 |
| Bra010832.1-P | Field mustard | nucleus | 31.79 | 32.6 |
| CDY61669 | Canola | nucleus | 28.59 | 32.57 |
| Bra021900.1-P | Field mustard | nucleus | 31.67 | 32.52 |
| CDX94662 | Canola | nucleus | 30.96 | 32.42 |
| CDY43685 | Canola | nucleus | 31.79 | 32.29 |
| CDX99817 | Canola | nucleus | 23.61 | 32.1 |
| Bra013287.1-P | Field mustard | nucleus | 29.66 | 32.05 |
| CDX78828 | Canola | nucleus | 26.45 | 31.95 |
| Bra032310.1-P | Field mustard | nucleus | 32.38 | 31.78 |
| Bra022970.1-P | Field mustard | nucleus | 30.37 | 31.64 |
| CDX84653 | Canola | nucleus | 30.13 | 31.24 |
| CDY61562 | Canola | nucleus | 27.52 | 30.45 |
| AT4G18150.1 | Thale cress | nucleus | 25.98 | 28.89 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 21.59 | 27.16 |
| CDY08888 | Canola | nucleus | 15.66 | 22.88 |
| CDX76544 | Canola | nucleus | 15.3 | 22.67 |
| Bra021022.1-P | Field mustard | nucleus | 16.01 | 21.74 |
| AT5G46380.2 | Thale cress | nucleus | 15.78 | 20.09 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 19.57 | 20.02 |
| CDY11787 | Canola | nucleus | 17.44 | 19.95 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 15.9 | 15.47 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G241600.2 | EnsemblPlantsGene:TraesCS3D01G241600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:335665494..335680993
Molecular Weight (calculated)
89564.3 Da
IEP (calculated)
5.216
GRAVY (calculated)
-0.646
Length
843 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGGGGRG PAAGPVPASA RKLVQGLKEI VSRSDSEIYA ALRDCGMDPD EAVSRLLSQD TFQEVKNKRD KKKEVNKGTP EPRSRGTNNS NSRAARVGTD
101: RTNRSSSARS VSGGVDNVAS RSSILGPGVP STNSAQKPTV PSSFANNDVV PDGLCGASQS SSGFQQNWCG VPGQMSMADI VKMGRPQGRS SSKSAATADK
201: AFAGQNPSLS NEKNHNTKQS ASTVAPTTFD QGFPALPDPI PQVINSNHAS ADSHQTHENV WFTQDGPPSQ NQFTAPGPSG GPLSFVASLE SSVLVADAVN
301: LHEKSHTEDN ASIVKQTSIP SERHSEVLHD KVQFGDELLQ NSSTYQSQMH SFADEVEVSN VDVDSAATNF QHLSLQKEDQ AAANSADDNP AVIIPDHLQL
401: ENTDCAHLSF GSFESGAFSG LLPSKVPKYS MEEVPNSDET PAVDQIDIRN QDYYDNGALQ SSANEDVETR IGTNIENIDA PSVSQPDILM QGALDVSGLQ
501: YNPPSVSDHV YPNTTQPSIM ESQQGNAQAQ HLSHFSSLLA QQANTLQSNF LGSNLTQHRD FDFSPFLSAQ SAMKYNPAVP TTSYPISMQE NLNQGGFSNT
601: QSTQNPPSTS IPSGLPQPQQ LSLHPYSQPT LPLGSFASLV GYPYLPQNYY VPPAAFQQAY SSNGPFHQSG GAAVPGSAMK YSMPQYKSGL PVTSPPQHSS
701: AVSGYGGFGS SSNIPNFGQN QSASPATTMG IDEALSSQFK EANHYMALQQ SDNSAMWLHG AAGSRAVSAV PPGNFYGFQG QSAQGGFREV QQPSQYGGLG
801: HPSFYQSQNG MQQEHPQNPA EGSLNSSQTA PSQPSHQMWQ HSY
101: RTNRSSSARS VSGGVDNVAS RSSILGPGVP STNSAQKPTV PSSFANNDVV PDGLCGASQS SSGFQQNWCG VPGQMSMADI VKMGRPQGRS SSKSAATADK
201: AFAGQNPSLS NEKNHNTKQS ASTVAPTTFD QGFPALPDPI PQVINSNHAS ADSHQTHENV WFTQDGPPSQ NQFTAPGPSG GPLSFVASLE SSVLVADAVN
301: LHEKSHTEDN ASIVKQTSIP SERHSEVLHD KVQFGDELLQ NSSTYQSQMH SFADEVEVSN VDVDSAATNF QHLSLQKEDQ AAANSADDNP AVIIPDHLQL
401: ENTDCAHLSF GSFESGAFSG LLPSKVPKYS MEEVPNSDET PAVDQIDIRN QDYYDNGALQ SSANEDVETR IGTNIENIDA PSVSQPDILM QGALDVSGLQ
501: YNPPSVSDHV YPNTTQPSIM ESQQGNAQAQ HLSHFSSLLA QQANTLQSNF LGSNLTQHRD FDFSPFLSAQ SAMKYNPAVP TTSYPISMQE NLNQGGFSNT
601: QSTQNPPSTS IPSGLPQPQQ LSLHPYSQPT LPLGSFASLV GYPYLPQNYY VPPAAFQQAY SSNGPFHQSG GAAVPGSAMK YSMPQYKSGL PVTSPPQHSS
701: AVSGYGGFGS SSNIPNFGQN QSASPATTMG IDEALSSQFK EANHYMALQQ SDNSAMWLHG AAGSRAVSAV PPGNFYGFQG QSAQGGFREV QQPSQYGGLG
801: HPSFYQSQNG MQQEHPQNPA EGSLNSSQTA PSQPSHQMWQ HSY
001: MKTYILVWSC MMSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK
101: PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS
201: FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL
301: ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ
401: SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA
501: ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS
601: GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS
201: FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL
301: ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ
401: SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA
501: ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS
601: GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.