Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90188 | Canola | nucleus | 95.62 | 95.62 |
| CDY48333 | Canola | nucleus | 83.58 | 83.48 |
| CDX99817 | Canola | nucleus | 62.41 | 82.74 |
| CDY15632 | Canola | nucleus | 78.59 | 82.19 |
| CDX94662 | Canola | nucleus | 79.68 | 81.37 |
| AT1G29370.1 | Thale cress | nucleus | 79.44 | 78.58 |
| AT1G29350.1 | Thale cress | nucleus | 79.44 | 78.58 |
| CDY61561 | Canola | cytosol | 5.47 | 68.18 |
| KRH38470 | Soybean | endoplasmic reticulum | 6.33 | 65.82 |
| CDX84653 | Canola | nucleus | 63.26 | 63.96 |
| CDY61562 | Canola | nucleus | 58.88 | 63.52 |
| CDY43685 | Canola | nucleus | 63.75 | 63.13 |
| CDY11787 | Canola | nucleus | 54.01 | 60.24 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 49.03 | 60.15 |
| Solyc09g018250.2.1 | Tomato | plastid | 7.3 | 56.6 |
| KRH36716 | Soybean | nucleus | 49.03 | 48.09 |
| KRH42968 | Soybean | nucleus | 48.91 | 48.03 |
| KRH59101 | Soybean | nucleus | 48.91 | 47.57 |
| KRH11725 | Soybean | nucleus | 48.42 | 47.38 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 49.27 | 46.5 |
| Solyc02g071180.2.1 | Tomato | nucleus | 45.26 | 44.66 |
| PGSC0003DMT400007972 | Potato | nucleus | 44.53 | 43.78 |
| Solyc03g005750.2.1 | Tomato | nucleus | 44.65 | 43.53 |
| CDY61669 | Canola | nucleus | 38.08 | 42.3 |
| Zm00001d035703_P001 | Maize | nucleus | 13.87 | 42.22 |
| Zm00001d017358_P001 | Maize | nucleus | 5.47 | 40.91 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 10.46 | 40.57 |
| CDX78828 | Canola | nucleus | 34.43 | 40.54 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 37.96 | 37.37 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 36.37 | 35.22 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 37.47 | 35.08 |
| Os05t0566900-01 | Rice | extracellular | 36.13 | 34.86 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 36.62 | 34.72 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 36.74 | 34.71 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 36.86 | 34.71 |
| KXG33052 | Sorghum | nucleus | 34.55 | 34.51 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 37.96 | 34.29 |
| KXG22544 | Sorghum | nucleus | 35.4 | 34.0 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 6.33 | 33.99 |
| Zm00001d011517_P002 | Maize | nucleus | 34.18 | 33.45 |
| Os01t0663800-01 | Rice | plasma membrane | 34.06 | 32.9 |
| Zm00001d043962_P001 | Maize | nucleus | 33.45 | 32.66 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 33.45 | 32.54 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 33.21 | 32.38 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 32.0 | 32.31 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 33.82 | 31.95 |
| Zm00001d009591_P006 | Maize | nucleus | 33.21 | 31.86 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 36.5 | 31.68 |
| Zm00001d039041_P007 | Maize | nucleus | 34.43 | 31.37 |
| Zm00001d039138_P012 | Maize | nucleus | 31.02 | 30.76 |
| KXG22612 | Sorghum | nucleus | 30.9 | 30.53 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 30.54 | 29.7 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 30.41 | 29.34 |
| Zm00001d004950_P001 | Maize | nucleus | 10.83 | 28.71 |
| Zm00001d009683_P004 | Maize | nucleus | 29.08 | 28.08 |
| CDY08888 | Canola | nucleus | 19.46 | 27.73 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 7.54 | 27.68 |
| Os05t0581800-01 | Rice | nucleus | 28.47 | 27.46 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 28.59 | 27.26 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 27.13 | 26.14 |
| CDX76544 | Canola | nucleus | 17.88 | 25.83 |
| CDY43361 | Canola | nucleus | 14.72 | 20.9 |
| CDY24202 | Canola | nucleus | 13.75 | 20.04 |
| CDY28028 | Canola | nucleus | 18.49 | 18.81 |
| CDY22126 | Canola | nucleus | 18.61 | 18.68 |
| CDY35953 | Canola | nucleus | 18.49 | 18.65 |
| CDX97535 | Canola | nucleus | 17.4 | 16.57 |
| CDY65326 | Canola | nucleus | 16.91 | 16.33 |
| CDY39087 | Canola | nucleus | 17.27 | 16.27 |
| CDY33258 | Canola | nucleus | 17.03 | 16.07 |
| CDY53767 | Canola | nucleus | 11.56 | 15.45 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 2.31 | 14.39 |
| CDY53764 | Canola | extracellular, vacuole | 6.93 | 13.13 |
Protein Annotations
| EnsemblPlants:CDY43334 | EnsemblPlantsGene:GSBRNA2T00076389001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | ProteinID:CDY43334 | ProteinID:CDY43334.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EE496A | UniProt:A0A078I150 | MapMan:35.2 | : |
Description
BnaC03g59060DBnaC03g59060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I150]
Coordinates
chrLK032552:-:248655..252601
Molecular Weight (calculated)
89649.6 Da
IEP (calculated)
5.504
GRAVY (calculated)
-0.997
Length
822 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGKVIGGG GGGGARKGNN DIPSGSRKIV QSLKEIVNAP EAEIYAMLKE CNMDPNEAVH RLLSQDPFHE VKSKKEKKKE TRDVPDYRLR GANNTYNRGG
101: RGGGGSDRYA GRSGSAHLNS TDSGNFQGKS TNKRESGTQG YTSSWSSASG VANHHQTPHS DSVVTENRLP PAASSDGISS SSQPASGHQT PWFGAPGQMS
201: MADIVKRGRP QNKTTNSQRS EINHEHEVNA NHQVPVKDEW PSIEKPLAPI TSSVSVAPVE SEACGGAADF QSERGDQQHL RDRLENIQLE ESGVDHVQPG
301: SVGNVQEEDS GVSSESNDNQ YTYETQSHPV EHHKDEDEVS SGSADSQELT VDGHDQEVSH EDDRRAVVIP KHLLIHTEEC SQLSFGSFGG FGSRPLSNNA
401: EETPDVAPQI EHSDARNTEF YGDERLGSTV NGSMGHAPAA GSYDDSLESR REVLKQENPE TVQENQYAFA QSEPEYAKQQ QQQLNTAYDA SQTNAQNQMQ
501: NLASLSNVMQ GYPHSDPNSL LAQNARELEF QYSNFAQSMQ SRNSNNASSL GGQSISMPEA LRGSGTPATQ PMQQNLQGAN IATGPALPQQ LPQMHPYSQP
601: TMPLAHFANM ISYPLIPQNY PYMPSAFQQT YAGNTSYHQQ LAALLPQYKT NLSPSNLPQS ATAPASAYGF GNSTNVGSAG NFPINQQQSA PTGYEDVLSS
701: QYKESNHLLA LQHQQQQNEN SAMWHHGHGS RTMSGVPANT YYNLQAQQQQ LQQTQQAAAG GYRQAQQQQQ QRYGSHGYPN FYQSQTEMSL ERQQQNPRDG
801: AGAQVGQQTS DQTQQQLWQN SY
101: RGGGGSDRYA GRSGSAHLNS TDSGNFQGKS TNKRESGTQG YTSSWSSASG VANHHQTPHS DSVVTENRLP PAASSDGISS SSQPASGHQT PWFGAPGQMS
201: MADIVKRGRP QNKTTNSQRS EINHEHEVNA NHQVPVKDEW PSIEKPLAPI TSSVSVAPVE SEACGGAADF QSERGDQQHL RDRLENIQLE ESGVDHVQPG
301: SVGNVQEEDS GVSSESNDNQ YTYETQSHPV EHHKDEDEVS SGSADSQELT VDGHDQEVSH EDDRRAVVIP KHLLIHTEEC SQLSFGSFGG FGSRPLSNNA
401: EETPDVAPQI EHSDARNTEF YGDERLGSTV NGSMGHAPAA GSYDDSLESR REVLKQENPE TVQENQYAFA QSEPEYAKQQ QQQLNTAYDA SQTNAQNQMQ
501: NLASLSNVMQ GYPHSDPNSL LAQNARELEF QYSNFAQSMQ SRNSNNASSL GGQSISMPEA LRGSGTPATQ PMQQNLQGAN IATGPALPQQ LPQMHPYSQP
601: TMPLAHFANM ISYPLIPQNY PYMPSAFQQT YAGNTSYHQQ LAALLPQYKT NLSPSNLPQS ATAPASAYGF GNSTNVGSAG NFPINQQQSA PTGYEDVLSS
701: QYKESNHLLA LQHQQQQNEN SAMWHHGHGS RTMSGVPANT YYNLQAQQQQ LQQTQQAAAG GYRQAQQQQQ QRYGSHGYPN FYQSQTEMSL ERQQQNPRDG
801: AGAQVGQQTS DQTQQQLWQN SY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.