Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35953 | Canola | nucleus | 93.69 | 92.88 |
| Bra029667.1-P | Field mustard | nucleus | 92.45 | 90.44 |
| CDY22126 | Canola | nucleus | 81.81 | 80.71 |
| AT3G07660.1 | Thale cress | nucleus | 81.44 | 78.24 |
| KRH16977 | Soybean | nucleus | 50.87 | 46.81 |
| KRH72609 | Soybean | nucleus | 50.25 | 45.93 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 50.12 | 45.2 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 43.56 | 41.95 |
| Solyc07g045230.2.1 | Tomato | nucleus | 44.8 | 41.32 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 43.32 | 39.91 |
| Solyc05g018750.2.1 | Tomato | nucleus | 39.73 | 39.34 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 25.99 | 39.33 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 41.09 | 38.52 |
| CDY61561 | Canola | cytosol | 3.09 | 37.88 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 37.87 | 37.14 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 37.75 | 37.01 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 37.62 | 36.89 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 28.71 | 36.14 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 37.38 | 33.89 |
| KXG24955 | Sorghum | nucleus | 31.44 | 31.24 |
| Zm00001d050112_P011 | Maize | nucleus | 30.94 | 29.52 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 4.46 | 27.27 |
| CDY43361 | Canola | nucleus | 17.57 | 24.52 |
| CDY24202 | Canola | nucleus | 17.08 | 24.47 |
| CDY53764 | Canola | extracellular, vacuole | 13.12 | 24.42 |
| CDY53767 | Canola | nucleus | 17.08 | 22.44 |
| CDX78828 | Canola | nucleus | 17.08 | 19.77 |
| CDY08888 | Canola | nucleus | 14.11 | 19.76 |
| CDY61669 | Canola | nucleus | 17.95 | 19.59 |
| CDY65326 | Canola | nucleus | 20.42 | 19.39 |
| CDX97535 | Canola | nucleus | 20.42 | 19.12 |
| CDY15632 | Canola | nucleus | 18.56 | 19.08 |
| CDX76544 | Canola | nucleus | 13.37 | 18.98 |
| CDY48333 | Canola | nucleus | 19.18 | 18.83 |
| CDY43334 | Canola | nucleus | 18.81 | 18.49 |
| CDX90188 | Canola | nucleus | 18.81 | 18.49 |
| CDX84653 | Canola | nucleus | 18.44 | 18.33 |
| CDY43685 | Canola | nucleus | 18.81 | 18.31 |
| CDX94662 | Canola | nucleus | 18.19 | 18.26 |
| CDY33258 | Canola | nucleus | 18.94 | 17.57 |
| CDY39087 | Canola | nucleus | 18.94 | 17.53 |
| CDX99817 | Canola | nucleus | 12.99 | 16.94 |
| CDY61562 | Canola | nucleus | 15.72 | 16.67 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 12.87 | 15.52 |
| CDY11787 | Canola | nucleus | 10.15 | 11.13 |
Protein Annotations
| EnsemblPlants:CDY28028 | EnsemblPlantsGene:GSBRNA2T00038966001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | ProteinID:CDY28028 | ProteinID:CDY28028.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EDC22C | UniProt:A0A078GTT5 | MapMan:35.2 | : |
Description
BnaC05g44300DBnaC05g44300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTT5]
Coordinates
chrLK032213:+:320962..325422
Molecular Weight (calculated)
86605.6 Da
IEP (calculated)
6.784
GRAVY (calculated)
-0.759
Length
808 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGSGARVST DADTRKTIQT IKEITAGNYS EDEIHAMLLE CSMNPDEAAQ RLLLQDPFLE VKKKRDKRKE NVSSKDSVDP QWRSGGPGRG SRGGRMNFSS
101: RHSSHDGAGA KNFFRKENRP KQFTDPSTST SQQQIKTKDN ALVSSLSTVM DKSSVGLTSG SSDGAPPSAV ESSKNRVNTE QKSADSLPLS RPPSSEVRFT
201: SSNSKPVSEQ HLGQSKSQNR SRGVGKTLVN DAYVPRPASS HSNSTGSRPS SNYSNRSHQT VGPQRGKEWK PKPVNHTTTQ GSGASATAEA LAVPTEASEK
301: SVEDVVPSAE GTSKLQRQLE DLQVQRQHVI IPNHILVPDA ERTKFSFGSF DAGFSIASSS VAFPENEKRS APLSQNSQEV EDSFEEDELS HPNVHSTEKD
401: EENNVYSESP SQVPNDMAGE GIAAVYDVSK QENTLESESN HSPFDHVPSN ILGPIPPAPG SQLPQFENAD PQARDALRIP NFVVQQPFDT ASYYAQFYRS
501: GPDSDGRVSP FVSPGVASKF NGNVTVLPPH SSQTMQESGN NLVLSTASPT SLVTQPAGLM QSSIPVTQQP VPFLRPPGLH MSHYPPNYMP YGHYFSPFYL
601: PHPAMQQFLS NGGFAQQPQA SSGYPAPLPP PGAAATGGKY TLPHHKPGNN NNTGNLTHVG MPGGYGPPSH GSFPAGYNPN SAASAGNSTS NEDLNTLQLK
701: ENNGYSTTGQ QSEALPVWIA GPGRDVPSSF YGLQHHGQQH VTYAPAQAGH VTFPGMYHPG QAVTAAGGVH HPLLQQSQGV AGAEMVAPGP PNVFQQPQQT
801: PMNWPSNY
101: RHSSHDGAGA KNFFRKENRP KQFTDPSTST SQQQIKTKDN ALVSSLSTVM DKSSVGLTSG SSDGAPPSAV ESSKNRVNTE QKSADSLPLS RPPSSEVRFT
201: SSNSKPVSEQ HLGQSKSQNR SRGVGKTLVN DAYVPRPASS HSNSTGSRPS SNYSNRSHQT VGPQRGKEWK PKPVNHTTTQ GSGASATAEA LAVPTEASEK
301: SVEDVVPSAE GTSKLQRQLE DLQVQRQHVI IPNHILVPDA ERTKFSFGSF DAGFSIASSS VAFPENEKRS APLSQNSQEV EDSFEEDELS HPNVHSTEKD
401: EENNVYSESP SQVPNDMAGE GIAAVYDVSK QENTLESESN HSPFDHVPSN ILGPIPPAPG SQLPQFENAD PQARDALRIP NFVVQQPFDT ASYYAQFYRS
501: GPDSDGRVSP FVSPGVASKF NGNVTVLPPH SSQTMQESGN NLVLSTASPT SLVTQPAGLM QSSIPVTQQP VPFLRPPGLH MSHYPPNYMP YGHYFSPFYL
601: PHPAMQQFLS NGGFAQQPQA SSGYPAPLPP PGAAATGGKY TLPHHKPGNN NNTGNLTHVG MPGGYGPPSH GSFPAGYNPN SAASAGNSTS NEDLNTLQLK
701: ENNGYSTTGQ QSEALPVWIA GPGRDVPSSF YGLQHHGQQH VTYAPAQAGH VTFPGMYHPG QAVTAAGGVH HPLLQQSQGV AGAEMVAPGP PNVFQQPQQT
801: PMNWPSNY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.