CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69240
CDX73279
CDX75592
CDX84103
CDX84198
CDX89288
CDX92788
CDX98124
CDY12261
CDY22589
CDY24202
CDY24770
CDY29262
CDY31695
CDY32123
CDY35476
CDY36405
CDY40465
CDY43361
CDY46672
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13222.1	CDX98124	AT1G13730.1	21798944
AT3G13222.1	CDY36405	AT1G13730.1	21798944
AT3G13222.1	CDX84103	AT1G32150.1	25387999
AT3G13222.1	CDY12261	AT1G32150.1	25387999
AT3G13222.1	CDY22589	AT1G32150.1	25387999
AT3G13222.1	CDX73279	AT1G33470.1	21798944
AT3G13222.1	CDX84198	AT2G35530.1	25387999
AT3G13222.1	CDY31695	AT2G35530.1	25387999
AT3G13222.1	CDY32123	AT2G35530.1	25387999
AT3G13222.1	CDY40465	AT2G35530.1	25387999
AT3G13222.1	CDY65764	AT2G35530.1	25387999
AT3G13222.1	CDY24202	AT3G13222.1	21798944
AT3G13222.1	CDY43361	AT3G13222.1	21798944
AT3G13222.1	CDX89288	AT4G26990.1	21798944
AT3G13222.1	CDX92788	AT4G26990.1	21798944
AT3G13222.1	CDY29262	AT4G26990.1	21798944
AT3G13222.1	CDY46672	AT4G26990.1	21798944
AT3G13222.1	CDX69240	AT4G36730.1	25387999
AT3G13222.1	CDX75592	AT4G36730.1	25387999
AT3G13222.1	CDY24770	AT4G36730.1	25387999
AT3G13222.1	CDY35476	AT4G36730.1	25387999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039379.1-P	Field mustard	nucleus	65.11	96.17
CDY24202	Canola	nucleus	80.48	82.62
AT3G13222.1	Thale cress	nucleus	63.21	64.55
GSMUA_Achr1P09430_001	Banana	cytosol	7.25	47.19
Os09t0261400-01	Rice	plasma membrane	4.84	35.0
CDY61561	Canola	cytosol	3.8	33.33
CDY72379	Canola	cytosol, nucleus, plastid	7.08	31.06
CDY53764	Canola	extracellular, vacuole	21.93	29.26
CDY53767	Canola	nucleus	30.05	28.29
CDY28028	Canola	nucleus	24.52	17.57
CDY35953	Canola	nucleus	24.35	17.3
CDY22126	Canola	nucleus	23.49	16.61
CDY43334	Canola	nucleus	20.9	14.72
CDX90188	Canola	nucleus	20.73	14.6
CDY08888	Canola	nucleus	14.34	14.38
CDY48333	Canola	nucleus	20.21	14.22
CDX76544	Canola	nucleus	13.82	14.06
CDX94662	Canola	nucleus	19.52	14.04
CDY15632	Canola	nucleus	19.0	13.99
CDY43685	Canola	nucleus	20.03	13.98
CDX78828	Canola	nucleus	16.58	13.75
CDX84653	Canola	nucleus	19.0	13.53
CDY61669	Canola	nucleus	16.75	13.11
CDX97535	Canola	nucleus	19.34	12.98
CDY61562	Canola	nucleus	16.93	12.86
CDY65326	Canola	nucleus	18.65	12.69
CDX99817	Canola	nucleus	13.13	12.26
CDY33258	Canola	nucleus	17.62	11.71
CDY39087	Canola	nucleus	17.62	11.68
CDY37665	Canola	cytosol, nucleus, plastid	12.61	10.9
CDY11787	Canola	nucleus	10.54	8.28

Protein Annotations

EnsemblPlants:CDY43361	EnsemblPlantsGene:GSBRNA2T00076429001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GIP1
InterPro:UBA-like_sf	PANTHER:PTHR12758	PANTHER:PTHR12758:SF30	PFAM:PF06972	ProteinID:CDY43361	ProteinID:CDY43361.1
SEG:seg	SUPFAM:SSF46934	UniParc:UPI0004EEB567	UniProt:A0A078I0J6	MapMan:35.1	:

Description

BnaA01g29920DBnaA01g29920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0J6]

Coordinates

chrLK032554:+:62589..65755

Molecular Weight (calculated)

63042.6 Da

IEP (calculated)

5.699

GRAVY (calculated)

-0.693

Length

579 amino acids

Sequence
(BLAST)

001: MTTSNGGDVG SRVSIPADLR ETFQNIREYT GKQHSDEDIF AVFKDCLNDP HETAQKLLFL DTFHEVKGKR ERKKESLVPK TEDKGRNGRR NFASNYSGAN
101: NGRSGAFTRQ SGSNHRTRLS HTYHSFYVFT ALFGYGPPKA LASKPVIPPS GVSNSNITEE HPPSKCTSSS EDVTELKKSN ASETVPVSDS VVQNGTQCAV
201: DGTSKSSQQS STSSQRSATS NCGSQSDQVI RSESAGPKGN NQSLLKSDVG ERPHVTFPAH LQVAKMLENG LTFGSFDSNF VKETCCDNLT FGCDDSTIKS
301: SHGTAVYGAS DRKDISTFSQ DDNEISNSAP ETELALQSNQ TVQLVEGSEV DKLNEESLPI KDIHQVGYAD VPPISYPDQS SIAASQQAMH LLRQQYPLNF
401: FPYGLYYSQP FCIPQPYIQQ FLTPNGFQQQ SYLPPQDDAA LPPGDKLHSP QIKPGNNTGN SPPASFPSPY DSYAAAFNHI PSPPTTVNST HKEEKKEDDY
501: TTVPLSLANL QASAMYNLSL QGQPLPFPTL HAGFTGIYQQ TPPILQAPTI SPVTEQPIGP PLVTNQQPQA APTNMDNNY

Best Arabidopsis Sequence Match ( AT3G13222.1 )
(BLAST)

001: MSRISGDGGS RVSIPADLLQ TIQNIREVTG KQHSDEDIFS VFKECFSDPH ETTQKLLYLD TFHEVRSKRE RKKENLVPNT QGRGRTGRKN FASSYTDASN
101: GRSAAFKKQS GANHIIGGSG TASSAPNNAR NDTKPSSIMA PNPISLPSGI SNQKIQDAII SPVDKVDTEE QPLSKATSSS KDVVEPDKSK ESSVSVAVSD
201: SVVENDTQYA VVETFQIPQQ SERVIKSEVA ASKCKNESLL KSDVGERPHV TFPVHIQVAK MLENGLTFGS FDSNFVREAS SDKFTIGCDD SNIESSHGTA
301: ASARKDISTF SQDKNHEISN SAAQNELTLQ PDQTVLPEEG SEGDKVKNEV LPITDTHQAA KCDAPPISYP DQYSLAAAQQ AMHLYRQQYS LNYFPYGPYF
401: PPYYMPQPYI HQYLSPNGFQ QQSYLPPGDD APAPPGAELP LTHIKPGSDI GNSPPTTIPF SYTSYAFNHI PSAATINATH KEEKKENMYT TGPLSLANLQ
501: ASPMYNLSLQ GQPIAFPTMQ AGIRGLYQQT QPILAPLSIS ARTEPIGPSH VTNQQPQAAR TNLGNNY

Arabidopsis Description

GIP1GBF-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.