CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69240
CDX75592
CDX80004
CDX84103
CDX84198
CDX95685
CDY07176
CDY12261
CDY22589
CDY24770
CDY31695
CDY32123
CDY35476
CDY40465
CDY42029
CDY48506
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	CDX84103	AT1G32150.1	18315949
AT1G32150.1	CDY12261	AT1G32150.1	18315949
AT1G32150.1	CDY22589	AT1G32150.1	18315949
AT1G32150.1	CDX84198	AT2G35530.1	18315949
AT1G32150.1	CDY31695	AT2G35530.1	18315949
AT1G32150.1	CDY32123	AT2G35530.1	18315949
AT1G32150.1	CDY40465	AT2G35530.1	18315949
AT1G32150.1	CDY65764	AT2G35530.1	18315949
AT1G32150.1	CDX80004	AT2G46270.1	18315949
AT1G32150.1	CDX95685	AT2G46270.1	18315949
AT1G32150.1	CDY42029	AT2G46270.1	18315949
AT1G32150.1	CDY07176	AT4G01120.1	18315949
AT1G32150.1	CDY48506	AT4G01120.1	18315949
AT1G32150.1	CDX69240	AT4G36730.1	18315949
AT1G32150.1	CDX75592	AT4G36730.1	18315949
AT1G32150.1	CDY24770	AT4G36730.1	18315949
AT1G32150.1	CDY35476	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023243.1-P	Field mustard	nucleus	90.81	98.3
CDY22589	Canola	nucleus	97.11	96.61
AT1G32150.1	Thale cress	nucleus	83.99	82.26
CDY31695	Canola	nucleus	69.03	66.58
CDY40465	Canola	nucleus	51.97	66.0
CDY65764	Canola	nucleus	64.57	61.35
CDX84198	Canola	nucleus	69.29	57.52
Solyc08g005290.2.1	Tomato	nucleus	59.58	57.18
Solyc08g076100.2.1	Tomato	nucleus	59.58	55.5
VIT_02s0012g02250.t01	Wine grape	nucleus	60.1	55.45
KRH39598	Soybean	nucleus	59.84	55.07
KRH74331	Soybean	nucleus	59.58	54.7
KXG23316	Sorghum	nucleus	53.81	53.25
KRH45342	Soybean	nucleus	58.27	53.24
KRH07569	Soybean	nucleus	57.74	52.88
PGSC0003DMT400047522	Potato	nucleus	52.23	51.69
Zm00001d041142_P010	Maize	nucleus	51.71	51.57
GSMUA_Achr4P04530_001	Banana	nucleus	54.86	50.61
TraesCS5B01G122000.2	Wheat	nucleus	50.92	50.0
TraesCS5A01G115300.2	Wheat	nucleus	50.66	49.74
TraesCS5D01G124600.1	Wheat	nucleus	50.66	49.74
CDX84103	Canola	nucleus, plastid	44.36	48.84
GSMUA_Achr5P14150_001	Banana	nucleus	51.18	48.51
GSMUA_Achr4P11610_001	Banana	nucleus	37.8	48.32
Os12t0233800-02	Rice	nucleus	39.37	48.23
GSMUA_Achr6P01090_001	Banana	nucleus	51.18	47.22
Zm00001d039206_P001	Maize	nucleus	24.41	44.71
GSMUA_AchrUn_...	Banana	nucleus	44.62	44.62
EES04440	Sorghum	nucleus	40.94	44.57
GSMUA_Achr4P18980_001	Banana	nucleus	46.72	44.17
Zm00001d015118_P001	Maize	nucleus	33.6	44.14
Os02t0128200-01	Rice	nucleus	39.63	43.52
Zm00001d024041_P002	Maize	nucleus	39.11	43.31
TraesCSU01G019200.1	Wheat	nucleus	38.85	42.9
TraesCS6A01G087400.2	Wheat	nucleus	38.85	42.65
HORVU5Hr1G029130.19	Barley	nucleus	43.31	42.42
TraesCS6B01G110100.1	Wheat	nucleus	38.85	42.41
CDX69240	Canola	nucleus	34.65	42.17
GSMUA_Achr4P27400_001	Banana	nucleus	45.41	42.09
HORVU6Hr1G016240.10	Barley	nucleus	38.85	41.93
CDX75592	Canola	nucleus	34.38	41.85
CDY32123	Canola	nucleus	16.8	41.83
CDY24770	Canola	nucleus	33.6	40.89
Zm00001d053967_P001	Maize	nucleus	33.33	40.45
CDY35476	Canola	nucleus	33.07	40.26
CDX95685	Canola	nucleus	22.83	29.0
CDY07176	Canola	nucleus	25.72	27.0
CDY48506	Canola	nucleus	25.72	26.85
CDY42029	Canola	nucleus	28.08	25.85
CDX80004	Canola	golgi	28.35	24.38

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078FG90	UniProt:A0A078FG90	EnsemblPlants:CDY12261	ProteinID:CDY12261
ProteinID:CDY12261.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00061310001	InterPro:IPR004827
InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EEA794	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaA09g24610DBnaA09g24610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG90]

Coordinates

chrLK032019:-:156559..159452

Molecular Weight (calculated)

40546.4 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.969

Length

381 amino acids

Sequence
(BLAST)

001: MGSSEVDKSG EENEPKTPSS SSAPVTSQEP SSAVATPDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVAMYPPGGM YAHPSIPPGS
101: YPYSPYAMPS PNGMAEASGN TGSGVEGDGK QAEVKEKLPI KRSKGSLGSL NMIIGKKNEA GKNSGASANG ACSKRHSGSD GSSEGSDANS QNDSGSRHNG
201: KDGETASDSA QGPPRNGSNQ PVNQIVPVTP VSATGVPAPP TNLNMGMDYW SGHGTTVPGV VVDGSQSQTW VQDERELKRQ RRKESNRESA RRSRLRKQAE
301: CDELAQRADV LNGENASLRA EINKLRSQYE ELVAENNALK NRFSTVRSLE GVNLDGKEQE PETSTRQDVA ETTRGSYNNS A

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.