Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48506 | Canola | nucleus | 95.32 | 94.79 |
| AT4G01120.1 | Thale cress | nucleus | 77.14 | 77.78 |
| CDX95685 | Canola | nucleus | 37.47 | 45.33 |
| KRH68860 | Soybean | nucleus | 52.62 | 44.94 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 52.89 | 44.65 |
| KRG97109 | Soybean | nucleus | 51.79 | 44.24 |
| CDY42029 | Canola | nucleus | 49.04 | 43.0 |
| KRH47979 | Soybean | nucleus | 49.59 | 42.45 |
| PGSC0003DMT400000266 | Potato | nucleus | 48.48 | 42.21 |
| Solyc01g095460.2.1 | Tomato | nucleus | 48.48 | 42.11 |
| KRH06537 | Soybean | nucleus | 48.76 | 41.75 |
| CDX80004 | Canola | golgi | 49.86 | 40.86 |
| PGSC0003DMT400084203 | Potato | nucleus | 46.28 | 40.68 |
| Solyc05g050220.2.1 | Tomato | nucleus | 44.35 | 38.7 |
| GSMUA_Achr6P32000_001 | Banana | nucleus | 37.19 | 35.81 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 41.6 | 35.45 |
| GSMUA_Achr9P05310_001 | Banana | nucleus | 40.22 | 35.1 |
| TraesCS1A01G409800.2 | Wheat | nucleus | 36.91 | 35.08 |
| CDY24770 | Canola | nucleus | 29.48 | 34.19 |
| CDY35476 | Canola | nucleus | 29.2 | 33.87 |
| Os05t0569300-01 | Rice | nucleus | 35.26 | 33.68 |
| Zm00001d039065_P006 | Maize | nucleus | 34.71 | 33.42 |
| Os01t0658900-01 | Rice | nucleus | 33.06 | 33.33 |
| CDX75592 | Canola | nucleus | 28.65 | 33.23 |
| CDX69240 | Canola | nucleus | 28.65 | 33.23 |
| TraesCS1D01G417100.1 | Wheat | nucleus | 36.64 | 33.08 |
| TraesCS1B01G439800.1 | Wheat | nucleus | 36.64 | 33.0 |
| EES18712 | Sorghum | nucleus | 33.88 | 32.2 |
| Zm00001d043992_P001 | Maize | nucleus | 32.78 | 31.57 |
| Zm00001d040500_P001 | Maize | nucleus | 16.53 | 30.93 |
| Zm00001d025638_P001 | Maize | nucleus | 16.25 | 30.89 |
| Zm00001d043908_P001 | Maize | nucleus | 16.25 | 30.89 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 37.47 | 29.76 |
| CDY32123 | Canola | nucleus | 12.12 | 28.76 |
| CDY12261 | Canola | nucleus | 27.0 | 25.72 |
| CDY22589 | Canola | nucleus | 26.72 | 25.33 |
| CDY31695 | Canola | nucleus | 27.55 | 25.32 |
| KXG33037 | Sorghum | nucleus | 33.33 | 24.4 |
| CDY40465 | Canola | nucleus | 19.83 | 24.0 |
| CDY65764 | Canola | nucleus | 25.9 | 23.44 |
| CDX84103 | Canola | nucleus, plastid | 21.21 | 22.25 |
| CDX84198 | Canola | nucleus | 27.0 | 21.35 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 20.94 | 20.54 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078F1B5 | EnsemblPlants:CDY07176 | ProteinID:CDY07176 | ProteinID:CDY07176.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00123534001 | InterPro:IPR004827 | InterPro:MFMR |
| PFAM:PF00170 | PFAM:PF07777 | PFAM:PF16596 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF230 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0004EEC50B | InterPro:bZIP | SEG:seg |
Description
BnaCnng01910D
Coordinates
chrLK031975:-:677315..679974
Molecular Weight (calculated)
39313.4 Da
IEP (calculated)
7.036
GRAVY (calculated)
-0.979
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNEEGKTT QSDKPAQVQA PPPPEQSNVH VYHHDWAAMQ AYYGPRGAIT PQYYNSNGHA PPYIWGSPSP MMAPYGTPYP PFCPPGGVYA HPALQMGTQP
101: QGAVSQATPV VATPLNLEAH PANSSGNTDQ GFMKKLKEFD GLAMSISNNK TGSAEHSSEP KNSQSSENDD SSNGSDGNTT GGEQSRKKRS REGSPNNDGK
201: PSSQIVPLLR DENEKQAVTM GTPVMPTVLD FPQPRHGAPH EVWNEKEVKR EKRKQSNRES ARRSRLRKQA ETEELSVKVD ALVAENMTLR SKLGQLNDES
301: EKLRLENQAL LDQLKAQATG KTENLISGVD KNNNSVSGSS SSSKNAEQQL LNVSLRTDSV AAS
101: QGAVSQATPV VATPLNLEAH PANSSGNTDQ GFMKKLKEFD GLAMSISNNK TGSAEHSSEP KNSQSSENDD SSNGSDGNTT GGEQSRKKRS REGSPNNDGK
201: PSSQIVPLLR DENEKQAVTM GTPVMPTVLD FPQPRHGAPH EVWNEKEVKR EKRKQSNRES ARRSRLRKQA ETEELSVKVD ALVAENMTLR SKLGQLNDES
301: EKLRLENQAL LDQLKAQATG KTENLISGVD KNNNSVSGSS SSSKNAEQQL LNVSLRTDSV AAS
001: MGSNEEGNPT NNSDKPSQAA APEQSNVHVY HHDWAAMQAY YGPRVGIPQY YNSNLAPGHA PPPYMWASPS PMMAPYGAPY PPFCPPGGVY AHPGVQMGSQ
101: PQGPVSQSAS GVTTPLTIDA PANSAGNSDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT TGGEQSRRKR RQQRSPSTGE
201: RPSSQNSLPL RGENEKPDVT MGTPVMPTAM SFQNSAGMNG VPQPWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLSVK VDALVAENMS LRSKLGQLNN
301: ESEKLRLENE AILDQLKAQA TGKTENLISR VDKNNSVSGS KTVQHQLLNA SPITDPVAAS
101: PQGPVSQSAS GVTTPLTIDA PANSAGNSDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT TGGEQSRRKR RQQRSPSTGE
201: RPSSQNSLPL RGENEKPDVT MGTPVMPTAM SFQNSAGMNG VPQPWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLSVK VDALVAENMS LRSKLGQLNN
301: ESEKLRLENE AILDQLKAQA TGKTENLISR VDKNNSVSGS KTVQHQLLNA SPITDPVAAS
Arabidopsis Description
GBF2G-box-binding factor 2 [Source:UniProtKB/Swiss-Prot;Acc:P42775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.