CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07569
KRH39598
KRH45342
KRH74331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	KRH07569	AT1G32150.1	18315949
AT2G46270.1	KRH39598	AT1G32150.1	18315949
AT2G46270.1	KRH45342	AT1G32150.1	18315949
AT2G46270.1	KRH74331	AT1G32150.1	18315949
AT2G46270.1	KRH07569	AT2G35530.1	18315949
AT2G46270.1	KRH39598	AT2G35530.1	18315949
AT2G46270.1	KRH45342	AT2G35530.1	18315949
AT2G46270.1	KRH74331	AT2G35530.1	18315949
AT4G01120.1	KRH07569	AT1G32150.1	18315949
AT4G01120.1	KRH39598	AT1G32150.1	18315949
AT4G01120.1	KRH45342	AT1G32150.1	18315949
AT4G01120.1	KRH74331	AT1G32150.1	18315949
AT4G01120.1	KRH07569	AT2G35530.1	18315949
AT4G01120.1	KRH39598	AT2G35530.1	18315949
AT4G01120.1	KRH45342	AT2G35530.1	18315949
AT4G01120.1	KRH74331	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47979	Soybean	nucleus	90.57	90.57
KRH68860	Soybean	nucleus	79.25	79.06
KRG97109	Soybean	nucleus	78.54	78.35
VIT_15s0046g01440.t01	Wine grape	nucleus	65.8	64.88
Solyc01g095460.2.1	Tomato	nucleus	54.48	55.26
PGSC0003DMT400000266	Potato	nucleus	53.77	54.68
AT2G46270.1	Thale cress	nucleus	49.06	54.45
Bra004550.1-P	Field mustard	nucleus	48.11	53.83
PGSC0003DMT400084203	Potato	nucleus	49.53	50.85
CDX95685	Canola	nucleus	35.14	49.67
Solyc05g050220.2.1	Tomato	nucleus	48.11	49.04
CDY07176	Canola	nucleus	41.75	48.76
AT4G01120.1	Thale cress	nucleus	41.04	48.33
CDY42029	Canola	nucleus	47.17	48.31
Bra037382.1-P	Field mustard	nucleus	41.75	48.23
CDY48506	Canola	nucleus	41.27	47.95
GSMUA_Achr6P32000_001	Banana	nucleus	41.75	46.95
CDX80004	Canola	golgi	47.88	45.82
TraesCS1A01G409800.2	Wheat	nucleus	39.15	43.46
Zm00001d039065_P006	Maize	nucleus	37.97	42.71
Os05t0569300-01	Rice	nucleus	37.03	41.32
Zm00001d040500_P001	Maize	nucleus	18.87	41.24
GSMUA_Achr9P05310_001	Banana	nucleus	40.33	41.11
EES18712	Sorghum	nucleus	37.03	41.1
GSMUA_Achr1P05050_001	Banana	nucleus	41.27	41.08
Zm00001d025638_P001	Maize	nucleus	18.4	40.84
Zm00001d043908_P001	Maize	nucleus	18.4	40.84
TraesCS1D01G417100.1	Wheat	nucleus	38.68	40.8
TraesCS1B01G439800.1	Wheat	nucleus	38.68	40.69
Os01t0658900-01	Rice	nucleus	32.55	38.33
KRH69948	Soybean	nucleus	29.25	36.69
Zm00001d043992_P001	Maize	nucleus	32.55	36.6
HORVU1Hr1G090030.11	Barley	nucleus, plastid	38.92	36.1
KRH08310	Soybean	nucleus	28.3	35.5
KRH76850	Soybean	nucleus	27.59	33.52
KRH28623	Soybean	nucleus	28.54	32.79
KRH39598	Soybean	nucleus	31.6	32.37
KRH74331	Soybean	nucleus	31.6	32.29
KRH07569	Soybean	nucleus	30.9	31.49
KRH45342	Soybean	nucleus	30.9	31.41
KRG89193	Soybean	nucleus	20.28	28.86
KXG33037	Sorghum	nucleus	32.08	27.42
HORVU1Hr1G089970.10	Barley	cytosol	23.35	26.76

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:547789	EMBL:ACUP02009850	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G029000
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1MKN5	InterPro:IPR004827	EnsemblPlants:KRH06537	ProteinID:KRH06537
ProteinID:KRH06537.1	EMBL:KT031141	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI000233AD9B	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:2771730..2777136

Molecular Weight (calculated)

45391.6 Da

IEP (calculated)

8.443

GRAVY (calculated)

-0.810

Length

424 amino acids

Sequence
(BLAST)

001: MGNSEEEKSV KTGSPSSSPA TTEQTNQPNI HVYPDWAAMQ YYGPRVNIPP YFNSAVASGH APHPYMWGPP QPMMQPYGPP YAAFYSHGGV YTHPAVAIGP
101: HSHGQGVPSS PAAGTPSSVE SPTKFSGNTN QGLVKKLKGF DELAMSIGNC NAESAERGAE NRLSQSVDTE GSSDGSDGNT AGANQTKRKR SREGTPITDA
201: EGKTELQNGP ASKETASSKK IVSATPASVA GTLVGPVVSS GMATALELRN PSTVHSKANS TSAAQPCAVV RNETWLQNER ELKRERRKQS NRESARRSRL
301: RKQAETEELA RKVEMLTAEN VSLKSEITRL TEGSEQMRME NSALREKLIN TQLGPREEIT LSSIDSKRAA PVSTENLLSR VNNSGANDRT AENENDICEN
401: KPNSGAKLHQ LLDTNPRANA VAAG

Best Arabidopsis Sequence Match ( AT2G46270.1 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.