CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07569
KRH39598
KRH45342
KRH74331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	KRH07569	AT1G32150.1	18315949
AT4G36730.1	KRH39598	AT1G32150.1	18315949
AT4G36730.1	KRH45342	AT1G32150.1	18315949
AT4G36730.1	KRH74331	AT1G32150.1	18315949
AT4G36730.1	KRH07569	AT2G35530.1	18315949
AT4G36730.1	KRH39598	AT2G35530.1	18315949
AT4G36730.1	KRH45342	AT2G35530.1	18315949
AT4G36730.1	KRH74331	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69948	Soybean	nucleus	94.67	94.67
KRH76850	Soybean	nucleus	75.15	72.78
KRH28623	Soybean	nucleus	74.85	68.56
VIT_04s0023g01360.t01	Wine grape	nucleus	73.67	68.41
Solyc02g062950.2.1	Tomato	nucleus	66.27	65.69
Solyc02g085610.2.1	Tomato	nucleus	52.37	62.32
CDY24770	Canola	nucleus	57.1	61.66
CDY35476	Canola	nucleus	56.8	61.34
Bra010572.1-P	Field mustard	nucleus	56.51	61.02
AT4G36730.1	Thale cress	nucleus	56.8	60.95
CDX69240	Canola	nucleus	55.62	60.06
Bra011701.1-P	Field mustard	nucleus	55.62	60.06
CDX75592	Canola	nucleus	55.33	59.74
PGSC0003DMT400032960	Potato	nucleus	62.43	52.75
KRH07569	Soybean	nucleus	44.08	35.82
KRH45342	Soybean	nucleus	44.08	35.73
KRH74331	Soybean	nucleus	43.79	35.66
KRH39598	Soybean	nucleus	43.49	35.51
KRG89193	Soybean	nucleus	26.63	30.2
KRH68860	Soybean	nucleus	37.87	30.12
KRG97109	Soybean	nucleus	36.69	29.18
KRH06537	Soybean	nucleus	35.5	28.3
KRH47979	Soybean	nucleus	33.73	26.89

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:778191	EMBL:ACUP02010161	ncoils:Coil	EMBL:DQ787053
EnsemblPlantsGene:GLYMA_16G141500	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EnsemblPlants:KRH08310	ProteinID:KRH08310
ProteinID:KRH08310.1	ProteinID:KRH08311.1	ProteinID:KRH08312.1	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777
PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	UniProt:Q0GPG1
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0000DDB496	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr16:-:29961067..29964069

Molecular Weight (calculated)

35687.9 Da

IEP (calculated)

5.285

GRAVY (calculated)

-0.875

Length

338 amino acids

Sequence
(BLAST)

001: MGAGEESTAK SSKSSSSAQQ DTPTAPAYPD WSSSMQAYYA PGATPPPFFA TTVASPTPHP YLWGGQHPLM PPYGTPVPYP AIYPPGSIYA HPSMAVTPSA
101: VQQNTEIEGK GAEGKYRDSS KKLKGPSANT ASKAGESGKA GSGSGNDGIS QSGESGSEGS SNASDENTNQ QESAANKKGS FDLMLVDGAN AQNNSAGAIS
201: QSSVPGKPVV PMPATNLNIG MDLWNASSGG AEAAKMRHNQ SGAPGVALGD QWVQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQKRV ESLGGENQTL
301: REELQRLSEE CEKLTSENNS IKEELERLCG PEAVANLD

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.