Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra011701.1-P | Field mustard | nucleus | 97.12 | 97.12 |
CDX75592 | Canola | nucleus | 97.12 | 97.12 |
CDY24770 | Canola | nucleus | 90.1 | 90.1 |
CDY35476 | Canola | nucleus | 87.86 | 87.86 |
AT4G36730.1 | Thale cress | nucleus | 85.62 | 85.08 |
KRH08310 | Soybean | nucleus | 60.06 | 55.62 |
KRH69948 | Soybean | nucleus | 59.74 | 55.33 |
VIT_04s0023g01360.t01 | Wine grape | nucleus | 62.3 | 53.57 |
Solyc02g062950.2.1 | Tomato | nucleus | 58.15 | 53.37 |
KRH76850 | Soybean | nucleus | 55.59 | 49.86 |
Solyc02g085610.2.1 | Tomato | nucleus | 44.09 | 48.59 |
KRH28623 | Soybean | nucleus | 55.27 | 46.88 |
VIT_18s0001g12120.t01 | Wine grape | nucleus | 56.55 | 44.47 |
PGSC0003DMT400032960 | Potato | nucleus | 52.72 | 41.25 |
CDY12261 | Canola | nucleus | 42.17 | 34.65 |
CDY22589 | Canola | nucleus | 41.85 | 34.2 |
CDY31695 | Canola | nucleus | 40.89 | 32.41 |
CDX84103 | Canola | nucleus, plastid | 35.46 | 32.08 |
CDY40465 | Canola | nucleus | 30.35 | 31.67 |
CDY65764 | Canola | nucleus | 37.7 | 29.43 |
CDY32123 | Canola | nucleus | 14.06 | 28.76 |
CDY07176 | Canola | nucleus | 33.23 | 28.65 |
CDY48506 | Canola | nucleus | 32.91 | 28.22 |
CDX84198 | Canola | nucleus | 40.89 | 27.89 |
CDX95685 | Canola | nucleus | 25.56 | 26.67 |
CDY42029 | Canola | nucleus | 34.5 | 26.09 |
KRG89193 | Soybean | nucleus | 23.96 | 25.17 |
CDX80004 | Canola | golgi | 34.82 | 24.61 |
Protein Annotations
Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078BWR0 | EnsemblPlants:CDX69240 | ProteinID:CDX69240 | ProteinID:CDX69240.1 |
ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00131046001 | InterPro:IPR004827 | InterPro:MFMR |
PFAM:PF00170 | PFAM:PF07777 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF123 |
SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0004EE92E3 | InterPro:bZIP | SEG:seg | : |
Description
BnaC01g02130D
Coordinates
chrLK031789:-:3656878..3659364
Molecular Weight (calculated)
33687.9 Da
IEP (calculated)
6.111
GRAVY (calculated)
-1.078
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTSEEKTPS KPASSTQDIP PTPYPDWSNS MQAYYGGGGT PSPFFPSPVG SPSPHPYMWG AQHHMMPPYG TPVPYPAMYP PGAVYAHPGM PMPPSSAPTN
101: ETVKEQAPGK KSKGSLKRKG EGGEKAPSGS GNDGVSHSDE SVTGGSSDEN DENANHQEHG SVRKPSFGQM LADASSQSNT TGEMIQGSVP MKPLAPGTNL
201: NMGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RLESLTSENQ SLRDELQRLS GECEKLKTQN SSIQDELVRV HGPEAVANLE
301: QNADGSKDGE GTD
101: ETVKEQAPGK KSKGSLKRKG EGGEKAPSGS GNDGVSHSDE SVTGGSSDEN DENANHQEHG SVRKPSFGQM LADASSQSNT TGEMIQGSVP MKPLAPGTNL
201: NMGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RLESLTSENQ SLRDELQRLS GECEKLKTQN SSIQDELVRV HGPEAVANLE
301: QNADGSKDGE GTD
001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN
Arabidopsis Description
GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.