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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra011701.1-P Field mustard nucleus 97.12 97.12
CDX75592 Canola nucleus 97.12 97.12
CDY24770 Canola nucleus 90.1 90.1
CDY35476 Canola nucleus 87.86 87.86
AT4G36730.1 Thale cress nucleus 85.62 85.08
KRH08310 Soybean nucleus 60.06 55.62
KRH69948 Soybean nucleus 59.74 55.33
VIT_04s0023g01360.t01 Wine grape nucleus 62.3 53.57
Solyc02g062950.2.1 Tomato nucleus 58.15 53.37
KRH76850 Soybean nucleus 55.59 49.86
Solyc02g085610.2.1 Tomato nucleus 44.09 48.59
KRH28623 Soybean nucleus 55.27 46.88
VIT_18s0001g12120.t01 Wine grape nucleus 56.55 44.47
PGSC0003DMT400032960 Potato nucleus 52.72 41.25
CDY12261 Canola nucleus 42.17 34.65
CDY22589 Canola nucleus 41.85 34.2
CDY31695 Canola nucleus 40.89 32.41
CDX84103 Canola nucleus, plastid 35.46 32.08
CDY40465 Canola nucleus 30.35 31.67
CDY65764 Canola nucleus 37.7 29.43
CDY32123 Canola nucleus 14.06 28.76
CDY07176 Canola nucleus 33.23 28.65
CDY48506 Canola nucleus 32.91 28.22
CDX84198 Canola nucleus 40.89 27.89
CDX95685 Canola nucleus 25.56 26.67
CDY42029 Canola nucleus 34.5 26.09
KRG89193 Soybean nucleus 23.96 25.17
CDX80004 Canola golgi 34.82 24.61
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1GO:A0A078BWR0EnsemblPlants:CDX69240ProteinID:CDX69240ProteinID:CDX69240.1
ncoils:CoilGO:GO:0003674GO:GO:0003700GO:GO:0006139GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00131046001InterPro:IPR004827InterPro:MFMR
PFAM:PF00170PFAM:PF07777ScanProsite:PS00036PFscan:PS50217PANTHER:PTHR22952PANTHER:PTHR22952:SF123
SMART:SM00338SUPFAM:SSF57959UniParc:UPI0004EE92E3InterPro:bZIPSEG:seg:
Description
BnaC01g02130D
Coordinates
chrLK031789:-:3656878..3659364
Molecular Weight (calculated)
33687.9 Da
IEP (calculated)
6.111
GRAVY (calculated)
-1.078
Length
313 amino acids
Sequence
(BLAST)
001: MGTSEEKTPS KPASSTQDIP PTPYPDWSNS MQAYYGGGGT PSPFFPSPVG SPSPHPYMWG AQHHMMPPYG TPVPYPAMYP PGAVYAHPGM PMPPSSAPTN
101: ETVKEQAPGK KSKGSLKRKG EGGEKAPSGS GNDGVSHSDE SVTGGSSDEN DENANHQEHG SVRKPSFGQM LADASSQSNT TGEMIQGSVP MKPLAPGTNL
201: NMGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RLESLTSENQ SLRDELQRLS GECEKLKTQN SSIQDELVRV HGPEAVANLE
301: QNADGSKDGE GTD
Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)
001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN
Arabidopsis Description
GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.