CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84103
CDX84198
CDY12261
CDY22589
CDY31695
CDY32123
CDY40465
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	CDX84103	AT1G32150.1	18315949
AT2G46270.1	CDY12261	AT1G32150.1	18315949
AT2G46270.1	CDY22589	AT1G32150.1	18315949
AT2G46270.1	CDX84198	AT2G35530.1	18315949
AT2G46270.1	CDY31695	AT2G35530.1	18315949
AT2G46270.1	CDY32123	AT2G35530.1	18315949
AT2G46270.1	CDY40465	AT2G35530.1	18315949
AT2G46270.1	CDY65764	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004550.1-P	Field mustard	nucleus	82.67	65.44
AT2G46270.1	Thale cress	nucleus	82.33	64.66
CDY42029	Canola	nucleus	82.33	59.66
CDX80004	Canola	golgi	83.0	56.21
CDY07176	Canola	nucleus	45.33	37.47
CDY48506	Canola	nucleus	45.33	37.26
KRG97109	Soybean	nucleus	52.0	36.71
KRH68860	Soybean	nucleus	51.33	36.24
VIT_15s0046g01440.t01	Wine grape	nucleus	50.67	35.35
KRH06537	Soybean	nucleus	49.67	35.14
PGSC0003DMT400000266	Potato	nucleus	48.67	35.01
KRH47979	Soybean	nucleus	49.33	34.91
Solyc01g095460.2.1	Tomato	nucleus	48.0	34.45
PGSC0003DMT400084203	Potato	nucleus	45.67	33.17
GSMUA_Achr6P32000_001	Banana	nucleus	41.0	32.63
Solyc05g050220.2.1	Tomato	nucleus	44.33	31.97
Zm00001d040500_P001	Maize	nucleus	20.0	30.93
Zm00001d025638_P001	Maize	nucleus	19.67	30.89
Zm00001d043908_P001	Maize	nucleus	19.67	30.89
Os05t0569300-01	Rice	nucleus	38.33	30.26
Zm00001d039065_P006	Maize	nucleus	37.0	29.44
Os01t0658900-01	Rice	nucleus	35.0	29.17
TraesCS1A01G409800.2	Wheat	nucleus	37.0	29.06
CDY32123	Canola	nucleus	14.67	28.76
EES18712	Sorghum	nucleus	36.33	28.53
GSMUA_Achr9P05310_001	Banana	nucleus	39.33	28.37
GSMUA_Achr1P05050_001	Banana	nucleus	40.0	28.17
Zm00001d043992_P001	Maize	nucleus	35.0	27.85
TraesCS1D01G417100.1	Wheat	nucleus	37.0	27.61
TraesCS1B01G439800.1	Wheat	nucleus	36.33	27.05
CDY24770	Canola	nucleus	27.0	25.88
CDX75592	Canola	nucleus	27.0	25.88
CDY35476	Canola	nucleus	26.67	25.56
CDX69240	Canola	nucleus	26.67	25.56
CDY40465	Canola	nucleus	24.67	24.67
HORVU1Hr1G090030.11	Barley	nucleus, plastid	36.33	23.85
CDY12261	Canola	nucleus	29.0	22.83
CDY22589	Canola	nucleus	28.33	22.19
KXG33037	Sorghum	nucleus	36.0	21.77
CDY31695	Canola	nucleus	27.67	21.01
CDY65764	Canola	nucleus	27.67	20.7
CDX84198	Canola	nucleus	27.0	17.65
HORVU1Hr1G089970.10	Barley	cytosol	20.0	16.22
CDX84103	Canola	nucleus, plastid	17.33	15.03

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078E1Q8	EnsemblPlants:CDX95685	ProteinID:CDX95685	ProteinID:CDX95685.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00101573001	InterPro:IPR004827	InterPro:MFMR
PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EDE676	InterPro:bZIP	SEG:seg

Description

BnaC03g25660D

Coordinates

chrLK031890:+:643581..645145

Molecular Weight (calculated)

32640.1 Da

IEP (calculated)

10.117

GRAVY (calculated)

-0.944

Length

300 amino acids

Sequence
(BLAST)

001: MWNSQHMMSP YGTPYAAVYP HGGGVSAHPG FPMRSQPQVQ KGPPLTTPGT PLNMDTPTKS TGNTDNGLMK KLKEFDGLAM SLGTAADERK RSWNSSETEG
101: STNGSDVNTT GADEPKLKRN REGTPTKDEK RYLVLSCSFR SVSPSSGDDG VKPVQRAIVS PGVSANSNSF MSQSLAMVQP ETWLQNEREL KRERRKQSNR
201: ESAKRSRLRK QAETEELARK VEALTAENMA LRSELNQLNE KSDKLRGANA ALLNNLKSSE PEKSVFGNKN SGSGCNESNS SSKLHQLLDT KPRADAVAAG

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.