Factsheet for VIT_15s0046g01440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g02250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	VIT_02s0012g02250.t01	AT1G32150.1	18315949
AT2G46270.1	VIT_02s0012g02250.t01	AT2G35530.1	18315949
AT4G01120.1	VIT_02s0012g02250.t01	AT1G32150.1	18315949
AT4G01120.1	VIT_02s0012g02250.t01	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68860	Soybean	nucleus	69.53	70.35
KRG97109	Soybean	nucleus	69.53	70.35
KRH06537	Soybean	nucleus	64.88	65.8
KRH47979	Soybean	nucleus	64.19	65.09
Solyc01g095460.2.1	Tomato	nucleus	60.93	62.68
PGSC0003DMT400000266	Potato	nucleus	60.23	62.11
PGSC0003DMT400084203	Potato	nucleus	55.58	57.87
AT2G46270.1	Thale cress	nucleus	51.16	57.59
Bra004550.1-P	Field mustard	nucleus	50.23	56.99
Solyc05g050220.2.1	Tomato	nucleus	53.72	55.53
CDY07176	Canola	nucleus	44.65	52.89
Bra037382.1-P	Field mustard	nucleus	45.12	52.86
CDY48506	Canola	nucleus	44.65	52.6
AT4G01120.1	Thale cress	nucleus	43.26	51.67
CDY42029	Canola	nucleus	49.3	51.21
CDX95685	Canola	nucleus	35.35	50.67
GSMUA_Achr6P32000_001	Banana	nucleus	43.26	49.34
CDX80004	Canola	golgi	50.0	48.53
GSMUA_Achr9P05310_001	Banana	nucleus	42.56	43.99
TraesCS1A01G409800.2	Wheat	nucleus	39.07	43.98
Os05t0569300-01	Rice	nucleus	38.84	43.95
GSMUA_Achr1P05050_001	Banana	nucleus	43.02	43.43
EES18712	Sorghum	nucleus	37.67	42.41
Zm00001d039065_P006	Maize	nucleus	36.98	42.18
TraesCS1D01G417100.1	Wheat	nucleus	39.07	41.79
Os01t0658900-01	Rice	nucleus	34.65	41.39
VIT_02s0025g01020.t01	Wine grape	nucleus	37.67	40.7
TraesCS1B01G439800.1	Wheat	nucleus	38.14	40.69
Zm00001d043992_P001	Maize	nucleus	34.65	39.52
Zm00001d040500_P001	Maize	nucleus	17.67	39.18
Zm00001d025638_P001	Maize	nucleus	16.98	38.22
Zm00001d043908_P001	Maize	nucleus	16.98	38.22
HORVU1Hr1G090030.11	Barley	nucleus, plastid	39.53	37.2
VIT_04s0023g01360.t01	Wine grape	nucleus	30.7	36.26
VIT_18s0001g12120.t01	Wine grape	nucleus	31.16	33.67
VIT_02s0012g02250.t01	Wine grape	nucleus	31.16	32.45
KXG33037	Sorghum	nucleus	34.65	30.04
HORVU1Hr1G089970.10	Barley	cytosol	24.42	28.38

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100248302	wikigene:100248302	MapMan:15.5.4.1	EMBL:AM460965	ProteinID:CAN81196
ProteinID:CAN81196.1	ProteinID:CBI40468	ProteinID:CBI40468.3	ncoils:Coil	UniProt:D7UCK3	EMBL:FN596755
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EntrezGene:LOC100248302	wikigene:LOC100248302	InterPro:MFMR
PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0001BE55B4	ArrayExpress:VIT_15s0046g01440	EnsemblPlantsGene:VIT_15s0046g01440
EnsemblPlants:VIT_15s0046g01440.t01	RefSeq:XP_002279966	RefSeq:XP_002279966.2	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr15:-:18416554..18423462

Molecular Weight (calculated)

45772.3 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.802

Length

430 amino acids

Sequence
(BLAST)

001: MGNEEEGKSP KPEKPTSPPP PDQANIHVYP DWAAMQAYYG PRVTLPPYYN SAMASGHAPH PYIWGPPQPM MPPYGPPYAA IYSPGGVYPH PAVPLGSHSH
101: GHGVQSSPVV SEALAAPPLS IETPAKSSGN TDRGLMKKLK GFDGLAMSIG NGNGESTEGG SDHGLSQSGE TEGSSDGSDG NTAGADQTRR KRSREGTPPI
201: GGDGKTETQA TSAPSAEVNA GSDKVLGVAV PPTSVTGKLA GAVLSPRMST ALELRNPPSV NAKTSPSSIP QPGAMVPSDT WILNEREIKR ERRKQSNRES
301: ARRSRLRKQA ETEELALKVE SLNTENSVLK SEINRLRENS EKLKLENATL MEKLKSAQLE QAEDTHLNKV DDKRVLPVST ENLLSRVNNS GSVDRSTEEE
401: GDMYEKNTNT GAKLHQLLDT SPRADAVAAG

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.