Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07176 | Canola | nucleus | 77.78 | 77.14 |
| CDY48506 | Canola | nucleus | 77.78 | 76.71 |
| Bra037382.1-P | Field mustard | nucleus | 77.78 | 76.29 |
| AT2G46270.1 | Thale cress | nucleus | 51.11 | 48.17 |
| KRH68860 | Soybean | nucleus | 51.39 | 43.53 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 51.67 | 43.26 |
| KRG97109 | Soybean | nucleus | 50.28 | 42.59 |
| KRH47979 | Soybean | nucleus | 48.89 | 41.51 |
| KRH06537 | Soybean | nucleus | 48.33 | 41.04 |
| PGSC0003DMT400000266 | Potato | nucleus | 47.5 | 41.01 |
| Solyc01g095460.2.1 | Tomato | nucleus | 46.67 | 40.19 |
| PGSC0003DMT400084203 | Potato | nucleus | 45.28 | 39.47 |
| Solyc05g050220.2.1 | Tomato | nucleus | 43.06 | 37.26 |
| GSMUA_Achr6P32000_001 | Banana | nucleus | 36.67 | 35.01 |
| TraesCS1A01G409800.2 | Wheat | nucleus | 36.67 | 34.55 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 40.83 | 34.51 |
| Os05t0569300-01 | Rice | nucleus | 36.11 | 34.21 |
| AT4G36730.1 | Thale cress | nucleus | 29.72 | 33.97 |
| GSMUA_Achr9P05310_001 | Banana | nucleus | 39.17 | 33.89 |
| Zm00001d039065_P006 | Maize | nucleus | 34.72 | 33.16 |
| EES18712 | Sorghum | nucleus | 34.72 | 32.72 |
| TraesCS1D01G417100.1 | Wheat | nucleus | 36.39 | 32.59 |
| TraesCS1B01G439800.1 | Wheat | nucleus | 36.11 | 32.26 |
| Os01t0658900-01 | Rice | nucleus | 31.67 | 31.67 |
| Zm00001d043992_P001 | Maize | nucleus | 32.78 | 31.3 |
| Zm00001d040500_P001 | Maize | nucleus | 16.11 | 29.9 |
| Zm00001d025638_P001 | Maize | nucleus | 15.83 | 29.84 |
| Zm00001d043908_P001 | Maize | nucleus | 15.83 | 29.84 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 36.67 | 28.88 |
| AT1G32150.1 | Thale cress | nucleus | 28.61 | 26.48 |
| AT2G35530.1 | Thale cress | nucleus | 29.44 | 25.92 |
| KXG33037 | Sorghum | nucleus | 32.5 | 23.59 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 20.83 | 20.27 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EntrezGene:826505 | ProteinID:AAC26198.1 | ProteinID:AEE81984.1 | ArrayExpress:AT4G01120 |
| EnsemblPlantsGene:AT4G01120 | RefSeq:AT4G01120 | TAIR:AT4G01120 | RefSeq:AT4G01120-TAIR-G | EnsemblPlants:AT4G01120.1 | TAIR:AT4G01120.1 |
| EMBL:AY062667 | EMBL:AY093316 | Unigene:At.23001 | ProteinID:CAB80921.1 | ncoils:Coil | Symbol:GBF2 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009637 | GO:GO:0009987 | GO:GO:0019748 | GO:GO:0019760 | GO:GO:0043565 | InterPro:IPR004827 |
| InterPro:MFMR | RefSeq:NP_192021.1 | UniProt:P42775 | PFAM:PF00170 | PFAM:PF07777 | PFAM:PF16596 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF230 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0000000E73 | EMBL:X63895 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
GBF2G-box-binding factor 2 [Source:UniProtKB/Swiss-Prot;Acc:P42775]
Coordinates
chr4:-:481569..484524
Molecular Weight (calculated)
38790.9 Da
IEP (calculated)
9.175
GRAVY (calculated)
-0.954
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNEEGNPT NNSDKPSQAA APEQSNVHVY HHDWAAMQAY YGPRVGIPQY YNSNLAPGHA PPPYMWASPS PMMAPYGAPY PPFCPPGGVY AHPGVQMGSQ
101: PQGPVSQSAS GVTTPLTIDA PANSAGNSDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT TGGEQSRRKR RQQRSPSTGE
201: RPSSQNSLPL RGENEKPDVT MGTPVMPTAM SFQNSAGMNG VPQPWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLSVK VDALVAENMS LRSKLGQLNN
301: ESEKLRLENE AILDQLKAQA TGKTENLISR VDKNNSVSGS KTVQHQLLNA SPITDPVAAS
101: PQGPVSQSAS GVTTPLTIDA PANSAGNSDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT TGGEQSRRKR RQQRSPSTGE
201: RPSSQNSLPL RGENEKPDVT MGTPVMPTAM SFQNSAGMNG VPQPWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLSVK VDALVAENMS LRSKLGQLNN
301: ESEKLRLENE AILDQLKAQA TGKTENLISR VDKNNSVSGS KTVQHQLLNA SPITDPVAAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.