Factsheet for GSMUA_Achr1P05050_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P04530_001
GSMUA_Achr4P11610_001
GSMUA_Achr4P18980_001
GSMUA_Achr4P27400_001
GSMUA_Achr5P14150_001
GSMUA_Achr6P01090_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_AchrUn_...	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32000_001	Banana	nucleus	42.02	47.48
GSMUA_Achr9P05310_001	Banana	nucleus	44.13	45.19
Os05t0569300-01	Rice	nucleus	39.2	43.95
KRG97109	Soybean	nucleus	43.19	43.29
KRH68860	Soybean	nucleus	42.96	43.06
VIT_15s0046g01440.t01	Wine grape	nucleus	43.43	43.02
TraesCS1A01G409800.2	Wheat	nucleus	38.5	42.93
KRH47979	Soybean	nucleus	41.78	41.98
AT2G46270.1	Thale cress	nucleus	37.56	41.88
PGSC0003DMT400000266	Potato	nucleus	40.85	41.73
CDY07176	Canola	nucleus	35.45	41.6
Solyc01g095460.2.1	Tomato	nucleus	40.61	41.39
Zm00001d039065_P006	Maize	nucleus	36.62	41.38
CDY48506	Canola	nucleus	35.45	41.37
EES18712	Sorghum	nucleus	37.09	41.36
KRH06537	Soybean	nucleus	41.08	41.27
Bra004550.1-P	Field mustard	nucleus	36.62	41.16
AT4G01120.1	Thale cress	nucleus	34.51	40.83
Bra037382.1-P	Field mustard	nucleus	34.98	40.6
TraesCS1D01G417100.1	Wheat	nucleus	38.26	40.55
Os01t0658900-01	Rice	nucleus	34.04	40.28
Zm00001d040500_P001	Maize	nucleus	18.31	40.21
CDX95685	Canola	nucleus	28.17	40.0
TraesCS1B01G439800.1	Wheat	nucleus	37.79	39.95
Zm00001d043908_P001	Maize	nucleus	17.61	39.27
Zm00001d025638_P001	Maize	nucleus	17.61	39.27
Zm00001d043992_P001	Maize	nucleus	33.8	38.2
PGSC0003DMT400084203	Potato	nucleus	36.85	38.01
CDY42029	Canola	nucleus	35.92	36.96
Solyc05g050220.2.1	Tomato	nucleus	35.92	36.78
VIT_02s0025g01020.t01	Wine grape	nucleus	34.27	36.68
HORVU1Hr1G090030.11	Barley	nucleus, plastid	38.26	35.67
CDX80004	Canola	golgi	36.38	34.99
GSMUA_Achr9P09280_001	Banana	nucleus	7.28	33.33
GSMUA_Achr6P01090_001	Banana	nucleus	29.34	30.27
GSMUA_Achr5P14150_001	Banana	nucleus	28.17	29.85
GSMUA_AchrUn_...	Banana	nucleus	26.53	29.66
GSMUA_Achr4P04530_001	Banana	nucleus	28.64	29.54
GSMUA_Achr4P11610_001	Banana	nucleus	20.66	29.53
KXG33037	Sorghum	nucleus	34.27	29.44
GSMUA_Achr4P18980_001	Banana	nucleus	27.23	28.78
GSMUA_Achr4P27400_001	Banana	nucleus	26.53	27.49
HORVU1Hr1G089970.10	Barley	cytosol	22.77	26.22
GSMUA_Achr6P00170_001	Banana	nucleus	23.0	26.13
GSMUA_Achr4P33130_001	Banana	nucleus	22.54	26.09

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G05050_001
EnsemblPlants:GSMUA_Achr1P05050_001	EnsemblPlants:GSMUA_Achr1T05050_001	InterPro:IPR004827	UniProt:M0RX63	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000294D23D	InterPro:bZIP	SEG:seg	:

Description

Putative Common plant regulatory factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G05050_001]

Coordinates

chr1:+:4184359..4189161

Molecular Weight (calculated)

45589.8 Da

IEP (calculated)

7.788

GRAVY (calculated)

-0.770

Length

426 amino acids

Sequence
(BLAST)

001: MGNNEATTPS KSEKPYSPVQ EQPAVHPYPD WAAMQAYYGP GVMPPPYFGT SVVPGHAPHP YMWAPQPFIP HFGSPYAGMY PHGVYPHSSL PPGTHGHYPG
101: LAPSSAATKA MATPLSIEMP DKASGSRDKG VMTKLKRFDG LTVSVDSRST NNAAGAYGNE LSQSGYNSAA GSSNGSDGSN SAGGSKDQRK RSSEDIQSSD
201: DRKVESNSDP AQGGERSSSS KLSSGVTVAH AKIAGNPVIN VPSPCQAQMM SVKTIDTPGR PPTIALVPGC NSQHLLSNNS LLYDERSLKR ERRKQSNRES
301: ARRSRLRKQA ENEELAKKVE ALSAENRTLI SKISQVTESS ETLRLENAAL LEKLNARSVH AEESSPDKME TDSAPSVVVE NFLSMIDKQS SSSLSEKQDD
401: EKSDKSNGKL RQLMDTSPTT DAVAAS

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.