Factsheet for Zm00001d043908_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015118_P001
Zm00001d024041_P002
Zm00001d039206_P001
Zm00001d041142_P010
Zm00001d053967_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	Zm00001d015118_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d024041_P002	AT1G32150.1	18315949
AT2G46270.1	Zm00001d039206_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d041142_P010	AT1G32150.1	18315949
AT2G46270.1	Zm00001d053967_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d015118_P001	AT2G35530.1	18315949
AT2G46270.1	Zm00001d024041_P002	AT2G35530.1	18315949
AT2G46270.1	Zm00001d039206_P001	AT2G35530.1	18315949
AT2G46270.1	Zm00001d041142_P010	AT2G35530.1	18315949
AT2G46270.1	Zm00001d053967_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d015118_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d024041_P002	AT1G32150.1	18315949
AT4G01120.1	Zm00001d039206_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d041142_P010	AT1G32150.1	18315949
AT4G01120.1	Zm00001d053967_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d015118_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d024041_P002	AT2G35530.1	18315949
AT4G01120.1	Zm00001d039206_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d041142_P010	AT2G35530.1	18315949
AT4G01120.1	Zm00001d053967_P001	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025638_P001	Maize	nucleus	100.0	100.0
Zm00001d040500_P001	Maize	nucleus	96.86	95.36
Zm00001d039065_P006	Maize	nucleus	91.1	46.15
EES18712	Sorghum	nucleus	79.58	39.79
Os05t0569300-01	Rice	nucleus	67.54	33.95
TraesCS1A01G409800.2	Wheat	nucleus	63.87	31.94
TraesCS1D01G417100.1	Wheat	nucleus	64.4	30.6
TraesCS1B01G439800.1	Wheat	nucleus	63.87	30.27
HORVU1Hr1G090030.11	Barley	nucleus, plastid	66.49	27.79
Zm00001d043992_P001	Maize	nucleus	43.98	22.28
Zm00001d024285_P001	Maize	nucleus	24.08	21.6
GSMUA_Achr6P32000_001	Banana	nucleus	40.31	20.42
CDX95685	Canola	nucleus	30.89	19.67
KRH06537	Soybean	nucleus	40.84	18.4
Zm00001d015118_P001	Maize	nucleus	27.75	18.28
GSMUA_Achr9P05310_001	Banana	nucleus	39.79	18.27
KRH47979	Soybean	nucleus	40.31	18.16
KRH68860	Soybean	nucleus	39.79	17.88
KRG97109	Soybean	nucleus	39.27	17.65
GSMUA_Achr1P05050_001	Banana	nucleus	39.27	17.61
VIT_15s0046g01440.t01	Wine grape	nucleus	38.22	16.98
Bra037382.1-P	Field mustard	nucleus	31.41	16.35
Zm00001d039206_P001	Maize	nucleus	17.8	16.35
CDY07176	Canola	nucleus	30.89	16.25
CDY48506	Canola	nucleus	30.89	16.16
Zm00001d053967_P001	Maize	nucleus	26.18	15.92
AT4G01120.1	Thale cress	nucleus	29.84	15.83
Bra004550.1-P	Field mustard	nucleus	31.41	15.83
AT2G46270.1	Thale cress	nucleus	31.41	15.71
Solyc05g050220.2.1	Tomato	nucleus	34.03	15.62
Solyc01g095460.2.1	Tomato	nucleus	34.03	15.55
PGSC0003DMT400084203	Potato	nucleus	33.51	15.5
Zm00001d034571_P001	Maize	nucleus	28.8	15.45
PGSC0003DMT400000266	Potato	nucleus	33.51	15.35
HORVU1Hr1G089970.10	Barley	cytosol	29.32	15.14
Zm00001d041142_P010	Maize	nucleus	29.84	14.92
CDY42029	Canola	nucleus	31.41	14.49
Zm00001d047967_P003	Maize	nucleus	30.37	13.71
CDX80004	Canola	golgi	31.41	13.54
Zm00001d005244_P002	Maize	nucleus	26.18	13.16
VIT_02s0025g01020.t01	Wine grape	nucleus	27.23	13.07
Zm00001d019166_P002	Maize	nucleus	25.13	12.37
Zm00001d024041_P002	Maize	nucleus	17.8	9.88
Zm00001d028372_P005	Maize	nucleus	30.37	9.57

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A0A1D6J892	ProteinID:AQK44136.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	ProteinID:ONM39420.1
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0004DE868F	EnsemblPlantsGene:Zm00001d043908	EnsemblPlants:Zm00001d043908_P001	EnsemblPlants:Zm00001d043908_T001	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

bZIP-transcription factor 19G-box-binding factor 3

Coordinates

chr3:-:213533138..213534279

Molecular Weight (calculated)

20718.5 Da

IEP (calculated)

9.396

GRAVY (calculated)

-0.590

Length

191 amino acids

Sequence
(BLAST)

001: MSDKYNQCLS TCVLAPNHTL GNATILPQHC FSAPVIKPSA TNVANSRAIG TTLSPPPGVM VPVHNAVPSD LSVKDERELK REKRKQSNRE SARRSRLRKQ
101: AETEELATQV ESLAAENTSL RSEIGRLTES SEKLRRENSA LMVKLKDTAE PSPSKAAASP SSPRASAENF LSMIDSANAP SVSRHTEQLI C

Best Arabidopsis Sequence Match ( AT2G46270.1 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.