Factsheet for Solyc01g095460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g005290.2.1
Solyc08g076100.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	Solyc08g005290.2.1	AT1G32150.1	18315949
AT2G46270.1	Solyc08g076100.2.1	AT1G32150.1	18315949
AT2G46270.1	Solyc08g005290.2.1	AT2G35530.1	18315949
AT2G46270.1	Solyc08g076100.2.1	AT2G35530.1	18315949
AT4G01120.1	Solyc08g005290.2.1	AT1G32150.1	18315949
AT4G01120.1	Solyc08g076100.2.1	AT1G32150.1	18315949
AT4G01120.1	Solyc08g005290.2.1	AT2G35530.1	18315949
AT4G01120.1	Solyc08g076100.2.1	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000266	Potato	nucleus	95.22	95.44
Solyc05g050220.2.1	Tomato	nucleus	65.07	65.38
VIT_15s0046g01440.t01	Wine grape	nucleus	62.68	60.93
KRH68860	Soybean	nucleus	59.81	58.82
KRG97109	Soybean	nucleus	59.57	58.59
KRH47979	Soybean	nucleus	55.98	55.19
KRH06537	Soybean	nucleus	55.26	54.48
AT2G46270.1	Thale cress	nucleus	48.33	52.88
Bra004550.1-P	Field mustard	nucleus	47.37	52.24
CDY07176	Canola	nucleus	42.11	48.48
Bra037382.1-P	Field mustard	nucleus	42.34	48.23
CDX95685	Canola	nucleus	34.45	48.0
CDY48506	Canola	nucleus	41.87	47.95
AT4G01120.1	Thale cress	nucleus	40.19	46.67
CDY42029	Canola	nucleus	46.17	46.62
CDX80004	Canola	golgi	47.37	44.7
GSMUA_Achr6P32000_001	Banana	nucleus	40.19	44.56
GSMUA_Achr9P05310_001	Banana	nucleus	40.91	41.11
GSMUA_Achr1P05050_001	Banana	nucleus	41.39	40.61
TraesCS1A01G409800.2	Wheat	nucleus	37.08	40.58
Os05t0569300-01	Rice	nucleus	36.6	40.26
Zm00001d039065_P006	Maize	nucleus	35.17	38.99
EES18712	Sorghum	nucleus	35.17	38.48
TraesCS1D01G417100.1	Wheat	nucleus	36.84	38.31
TraesCS1B01G439800.1	Wheat	nucleus	36.6	37.97
Os01t0658900-01	Rice	nucleus	31.58	36.67
Zm00001d043992_P001	Maize	nucleus	33.01	36.6
Solyc02g062950.2.1	Tomato	nucleus	29.19	35.78
Zm00001d040500_P001	Maize	nucleus	16.27	35.05
Solyc02g085610.2.1	Tomato	nucleus	23.45	34.51
HORVU1Hr1G090030.11	Barley	nucleus, plastid	37.32	34.14
Zm00001d025638_P001	Maize	nucleus	15.55	34.03
Zm00001d043908_P001	Maize	nucleus	15.55	34.03
Solyc08g005290.2.1	Tomato	nucleus	29.19	30.73
Solyc08g076100.2.1	Tomato	nucleus	28.23	28.85
KXG33037	Sorghum	nucleus	32.54	27.42
HORVU1Hr1G089970.10	Barley	cytosol	22.73	25.68

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4AZT5	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc01g095460.2
EnsemblPlants:Solyc01g095460.2.1	UniParc:UPI0002769112	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:86702793..86709270

Molecular Weight (calculated)

44661.8 Da

IEP (calculated)

5.984

GRAVY (calculated)

-0.782

Length

418 amino acids

Sequence
(BLAST)

001: MGNSEDGKSC KLEKPSSPAA DQSNRHVYPD WAAMQAYYGP RVAVPAYFNS AVAPGHTPHP YMWGPQPMVP PYGTPYAAIY AHGGVYAHPG VPIGSHPPGH
101: VMATSPVVSQ AMDGASLSLD ASAKSSGNSD RGLMSKLKEF EGLAMSLGNG STDNVEGGTD NGHSQSGETE GSTDGSDTNG AGVSERTKKR SCETTPDNSG
201: DDKSHSQRFQ PTGEVNDDAE KAIVVAAKMT GTVLSPCMTT LEMRNPASAH MKSSPTNGGS PLSPALPNET WLQNERELKR EKRKQSNRES ARRSRLRKQA
301: EAEELAIRVQ ALTGENLTLR SEINKLMENS EKLKLDNATL MERLKNEQLG QTEEVSLGKI DDKRLQPVGT VNLLARVNNS GSSDTTNEDG EVYENNSSGA
401: KLHQLLDTSP RTDAVAAG

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.