Factsheet for Solyc02g085610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g005290.2.1
Solyc08g076100.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	Solyc08g005290.2.1	AT1G32150.1	18315949
AT4G36730.1	Solyc08g076100.2.1	AT1G32150.1	18315949
AT4G36730.1	Solyc08g005290.2.1	AT2G35530.1	18315949
AT4G36730.1	Solyc08g076100.2.1	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032960	Potato	nucleus	87.68	62.25
Solyc02g062950.2.1	Tomato	nucleus	69.72	58.06
KRH08310	Soybean	nucleus	62.32	52.37
KRH69948	Soybean	nucleus	61.62	51.78
VIT_04s0023g01360.t01	Wine grape	nucleus	65.85	51.37
KRH76850	Soybean	nucleus	58.45	47.56
AT4G36730.1	Thale cress	nucleus	51.76	46.67
CDX75592	Canola	nucleus	49.3	44.73
Bra011701.1-P	Field mustard	nucleus	49.3	44.73
KRH28623	Soybean	nucleus	57.75	44.44
CDY35476	Canola	nucleus	48.59	44.09
CDX69240	Canola	nucleus	48.59	44.09
CDY24770	Canola	nucleus	48.24	43.77
Bra010572.1-P	Field mustard	nucleus	48.24	43.77
Solyc08g076100.2.1	Tomato	nucleus	41.2	28.61
Solyc08g005290.2.1	Tomato	nucleus	39.79	28.46
Solyc01g095460.2.1	Tomato	nucleus	34.51	23.45
Solyc05g050220.2.1	Tomato	nucleus	30.63	20.91

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4BB72	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc02g085610.2	EnsemblPlants:Solyc02g085610.2.1
UniParc:UPI000276922F	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:48432269..48437597

Molecular Weight (calculated)

30790.4 Da

IEP (calculated)

5.469

GRAVY (calculated)

-1.053

Length

284 amino acids

Sequence
(BLAST)

001: MPPYGTPVPY PALYPPAGVY AHPNIATPAP NSVPANPEAD GKGPEGKDRN SSKKLKVCSG GKAGDNGKVT SGSGNDGATQ SDESRSEGTS DTNDENDNNE
101: FAANKKGSFD QMLADGASAQ NNPAKENHPT SIHGNPVTMP ATNLNIGMDV WNASAAGPGA IKIQQNATGP VIGHEGRMND QWIQEERELK RQKRKQSNRE
201: SARRSRLRKQ AECEELQRRV EALSHENHSL KDELQRLSEE CEKLTSENNL IKEELTLLCG PDVVSKLERN DNVTRIQSNV EEAS

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.