Factsheet for Bra011701.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005335.1-P
Bra017316.1-P
Bra023012.1-P
Bra023243.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	Bra023243.1-P	AT1G32150.1	18315949
AT4G36730.1	Bra005335.1-P	AT2G35530.1	18315949
AT4G36730.1	Bra017316.1-P	AT2G35530.1	18315949
AT4G36730.1	Bra023012.1-P	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75592	Canola	nucleus	99.36	99.36
CDX69240	Canola	nucleus	97.12	97.12
Bra010572.1-P	Field mustard	nucleus	89.14	89.14
AT4G36730.1	Thale cress	nucleus	86.26	85.71
KRH08310	Soybean	nucleus	60.06	55.62
KRH69948	Soybean	nucleus	59.74	55.33
VIT_04s0023g01360.t01	Wine grape	nucleus	62.3	53.57
Solyc02g062950.2.1	Tomato	nucleus	58.15	53.37
KRH76850	Soybean	nucleus	55.59	49.86
Solyc02g085610.2.1	Tomato	nucleus	44.73	49.3
KRH28623	Soybean	nucleus	55.27	46.88
VIT_18s0001g12120.t01	Wine grape	nucleus	56.87	44.72
PGSC0003DMT400032960	Potato	nucleus	53.35	41.75
Bra023243.1-P	Field mustard	nucleus	39.3	34.94
Bra005335.1-P	Field mustard	nucleus	41.53	30.81
Bra023012.1-P	Field mustard	nucleus	37.7	29.28
Bra004550.1-P	Field mustard	nucleus	35.14	29.02
Bra037382.1-P	Field mustard	nucleus	33.55	28.61
KRG89193	Soybean	nucleus	23.96	25.17
Bra017316.1-P	Field mustard	nucleus	21.09	25.0

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra011701	EnsemblPlants:Bra011701.1	EnsemblPlants:Bra011701.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M4D5E4	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI00025469B4	InterPro:bZIP	SEG:seg	:	:

Description

AT4G36730 (E=3e-135) GBF1 | GBF1; sequence-specific DNA binding / transcription factor

Coordinates

chrA01:+:977886..979607

Molecular Weight (calculated)

33599.7 Da

IEP (calculated)

5.931

GRAVY (calculated)

-1.094

Length

313 amino acids

Sequence
(BLAST)

001: MGTSEEKTPS KPASSTQDIP PTPYPDWSNS MQAYYGGGGT PNPFFPSPVG SPSPHPYMWG AQHHMMPPYG TPVPYPAMYP PGAVYAHPGM PMPPASAPTN
101: KETVKEQAPG KKSKGSLKRK GEGGEKAPSG SGNDGVSHSD ESVTGGSSDE NDENPNHQEQ GSVGKPSFGQ MLADASSQSN TTGEIQGSVP MKPLAPGTNL
201: NMGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RVESLTSENQ SLRDELQRLS GECEKLKTQN SSIQDELVRV HGPEAVANLE
301: QNDAGSKDGE GTD

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.