Factsheet for VIT_18s0001g12120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g02250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	VIT_02s0012g02250.t01	AT1G32150.1	18315949
AT4G36730.1	VIT_02s0012g02250.t01	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g01360.t01	Wine grape	nucleus	59.3	64.84
AT4G36730.1	Thale cress	nucleus	45.98	58.1
CDY24770	Canola	nucleus	45.48	57.83
Bra010572.1-P	Field mustard	nucleus	44.97	57.19
Bra011701.1-P	Field mustard	nucleus	44.72	56.87
CDY35476	Canola	nucleus	44.72	56.87
CDX69240	Canola	nucleus	44.47	56.55
CDX75592	Canola	nucleus	44.47	56.55
VIT_02s0012g02250.t01	Wine grape	nucleus	36.43	35.11
VIT_15s0046g01440.t01	Wine grape	nucleus	33.67	31.16
KRG89193	Soybean	nucleus	21.86	29.19
VIT_02s0025g01020.t01	Wine grape	nucleus	27.89	27.89

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100250676	wikigene:100250676	MapMan:15.5.4.1	ProteinID:CBI19660	ProteinID:CBI19660.3
ncoils:Coil	UniProt:E0CQ14	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0044212	InterPro:IPR004827	EntrezGene:LOC100250676	wikigene:LOC100250676	InterPro:MFMR
PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959	TIGR:TC67657	UniParc:UPI00015C8054	ArrayExpress:VIT_18s0001g12120
EnsemblPlantsGene:VIT_18s0001g12120	EnsemblPlants:VIT_18s0001g12120.t01	unigene:Vvi.9877	RefSeq:XP_002283244	RefSeq:XP_002283244.1	RefSeq:XP_010664662.1
RefSeq:XP_019072177.1	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:10309606..10313842

Molecular Weight (calculated)

42183.5 Da

IEP (calculated)

6.189

GRAVY (calculated)

-0.859

Length

398 amino acids

Sequence
(BLAST)

001: MGDGEESTPP KSSKPPASTQ ETPSTPSYPD WSTSMQAYYG AGATPPPFFP SPVAPPSPHP YLWGGQHPMM PPYGTPLPYP ALYPRGALYA HPSMATAQGV
101: ALTNTDMEVK TPDGKDPASI KKSKAASGNM GLISGKSGES GKAASVSGND GASQSGESGS EASSDATDEN ANQASSAVKK RSFNLADGSN AKGNSAAQYT
201: GGNHSASVPG KPVVPMPTTS LNIGMDLWNA SPAGGTPMKT RPQSSGASPQ VASATIVGRE GMLQDHQWIQ DERELKRQRR KQSNRESARR SRLRKQAECE
301: ELQSKVEILS NENHVLREEL HRLAEQCEKL TSENNSIMEE LTQLYGPEAT SSLQDNNHNL VLHPINGEDD GHVQDASPLN NSSSTSDQNG KFSSNGKI

Best Arabidopsis Sequence Match ( AT4G36730.2 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QGSIRKPSFG QMLADASSQS TTGEIQGSVP MKPVAPGTNL
201: NIGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RVESLSNENQ SLRDELQRLS SECDKLKSEN NSIQDELQRV LGAEAVANLE
301: QNAAGSKDGE GTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.