Factsheet for VIT_02s0025g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g01440.t01	Wine grape	nucleus	40.7	37.67
GSMUA_Achr6P32000_001	Banana	nucleus	33.92	35.81
GSMUA_Achr1P05050_001	Banana	nucleus	36.68	34.27
TraesCS1A01G409800.2	Wheat	nucleus	32.41	33.77
Os01t0658900-01	Rice	nucleus	29.15	32.22
GSMUA_Achr9P05310_001	Banana	nucleus	33.67	32.21
VIT_04s0023g01360.t01	Wine grape	nucleus	29.15	31.87
Os05t0569300-01	Rice	nucleus	30.4	31.84
TraesCS1D01G417100.1	Wheat	nucleus	32.16	31.84
TraesCS1B01G439800.1	Wheat	nucleus	31.66	31.27
EES18712	Sorghum	nucleus	29.9	31.15
Zm00001d039065_P006	Maize	nucleus	29.15	30.77
Zm00001d043992_P001	Maize	nucleus	28.64	30.24
HORVU1Hr1G090030.11	Barley	nucleus, plastid	32.66	28.45
VIT_18s0001g12120.t01	Wine grape	nucleus	27.89	27.89
Zm00001d040500_P001	Maize	nucleus	13.57	27.84
Zm00001d025638_P001	Maize	nucleus	13.07	27.23
Zm00001d043908_P001	Maize	nucleus	13.07	27.23
VIT_02s0012g02250.t01	Wine grape	nucleus	27.39	26.39
KXG33037	Sorghum	nucleus	28.89	23.19
HORVU1Hr1G089970.10	Barley	cytosol	19.1	20.54

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100257104	wikigene:100257104	MapMan:15.5.4.1	ProteinID:CBI34444	ProteinID:CBI34444.3
ncoils:Coil	UniProt:D7TVB9	EMBL:FN596251	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
EntrezGene:LOC100257104	wikigene:LOC100257104	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959
TIGR:TC70026	UniParc:UPI0001BE454E	ArrayExpress:VIT_02s0025g01020	EnsemblPlantsGene:VIT_02s0025g01020	EnsemblPlants:VIT_02s0025g01020.t01	RefSeq:XP_002274755
RefSeq:XP_002274755.1	RefSeq:XP_003631394	RefSeq:XP_003631394.1	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:989255..996186

Molecular Weight (calculated)

43553.7 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.708

Length

398 amino acids

Sequence
(BLAST)

001: MGKSEAEMSS KSDKISSSAE EQTNIHLLNP DWASIQAYYG SGVPLLAPHF NSAVPGSHFP YPYVWAPSQP LIPPYGVPYT AIYSHEGVHA HPAVPLVATP
101: LSKKAPSRSS VDMDQGVRKK FKRLDGLAVP VGNVSTEDDA GGSVYEVSQS VKHGIDGSTD GSDGNTGAFL PQRNSGSEGI LSTDNDGNFH RFAGSLSEGE
201: AYAASHKVSV NSVAPTNVAG KSVRPLNRNE EIHAACVASS TSAGSPFEVC QQDERQLKRE RRKQANRESA KKSRLRKQAE NEELRMRYET LNEENKALKF
301: EISKLTEHLD KVRLENTALR EKLKNKQQLE LQGEMAPYKI EADLILPDSP EEVYKLNDSN SLNQNVQMEC GIQENPNSET KLHQLLKSNS RTDAIVAG

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.