Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P05310_001 | Banana | nucleus | 76.66 | 69.47 |
| KRH68860 | Soybean | nucleus | 49.87 | 44.24 |
| KRG97109 | Soybean | nucleus | 49.07 | 43.53 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 49.34 | 43.26 |
| Os01t0658900-01 | Rice | nucleus | 40.58 | 42.5 |
| Os05t0569300-01 | Rice | nucleus | 42.71 | 42.37 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 47.48 | 42.02 |
| TraesCS1A01G409800.2 | Wheat | nucleus | 42.44 | 41.88 |
| KRH06537 | Soybean | nucleus | 46.95 | 41.75 |
| KRH47979 | Soybean | nucleus | 46.68 | 41.51 |
| Zm00001d039065_P006 | Maize | nucleus | 41.38 | 41.38 |
| Zm00001d040500_P001 | Maize | nucleus | 21.22 | 41.24 |
| CDX95685 | Canola | nucleus | 32.63 | 41.0 |
| EES18712 | Sorghum | nucleus | 41.11 | 40.58 |
| Zm00001d025638_P001 | Maize | nucleus | 20.42 | 40.31 |
| Zm00001d043908_P001 | Maize | nucleus | 20.42 | 40.31 |
| Solyc01g095460.2.1 | Tomato | nucleus | 44.56 | 40.19 |
| PGSC0003DMT400000266 | Potato | nucleus | 44.3 | 40.05 |
| AT2G46270.1 | Thale cress | nucleus | 40.32 | 39.79 |
| TraesCS1D01G417100.1 | Wheat | nucleus | 42.18 | 39.55 |
| Zm00001d043992_P001 | Maize | nucleus | 39.26 | 39.26 |
| TraesCS1B01G439800.1 | Wheat | nucleus | 41.91 | 39.21 |
| PGSC0003DMT400084203 | Potato | nucleus | 42.71 | 38.98 |
| Bra004550.1-P | Field mustard | nucleus | 38.99 | 38.79 |
| Solyc05g050220.2.1 | Tomato | nucleus | 41.64 | 37.74 |
| CDY07176 | Canola | nucleus | 35.81 | 37.19 |
| Bra037382.1-P | Field mustard | nucleus | 36.07 | 37.06 |
| CDY48506 | Canola | nucleus | 35.81 | 36.99 |
| AT4G01120.1 | Thale cress | nucleus | 35.01 | 36.67 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 42.44 | 35.01 |
| CDY42029 | Canola | nucleus | 38.2 | 34.78 |
| VIT_02s0025g01020.t01 | Wine grape | nucleus | 35.81 | 33.92 |
| CDX80004 | Canola | golgi | 38.73 | 32.96 |
| GSMUA_Achr5P14150_001 | Banana | nucleus | 33.69 | 31.59 |
| GSMUA_Achr4P11610_001 | Banana | nucleus | 24.4 | 30.87 |
| GSMUA_Achr6P01090_001 | Banana | nucleus | 33.16 | 30.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.44 | 29.13 |
| GSMUA_Achr4P04530_001 | Banana | nucleus | 31.83 | 29.06 |
| GSMUA_Achr9P09280_001 | Banana | nucleus | 7.16 | 29.03 |
| GSMUA_Achr4P33130_001 | Banana | nucleus | 28.12 | 28.8 |
| KXG33037 | Sorghum | nucleus | 37.67 | 28.63 |
| GSMUA_Achr4P18980_001 | Banana | nucleus | 30.5 | 28.54 |
| GSMUA_Achr4P27400_001 | Banana | nucleus | 30.77 | 28.22 |
| GSMUA_Achr6P00170_001 | Banana | nucleus | 27.85 | 28.0 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 25.2 | 25.68 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G32000_001 |
| EnsemblPlants:GSMUA_Achr6P32000_001 | EnsemblPlants:GSMUA_Achr6T32000_001 | InterPro:IPR004827 | UniProt:M0TBZ5 | InterPro:MFMR | PFAM:PF00170 |
| PFAM:PF07777 | PFAM:PF16596 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF230 |
| SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0002968F73 | InterPro:bZIP | SEG:seg | : |
Description
Putative Common plant regulatory factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G32000_001]
Coordinates
chr6:+:31569492..31575266
Molecular Weight (calculated)
39975.9 Da
IEP (calculated)
9.840
GRAVY (calculated)
-0.689
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAYFGAGMM PPPYFSTAVA PSHAPHPYMW GPQPLVPPFG SPYAAIYPHG GVYTHPSVPL GSHTHCQGIS PSPATSEAVV LATPLSVEMP AKSSKHKDKS
101: LVKKLKGLDG LALSGGNGII EDRDQADGNS GYNSTEGSSD GSNGDNAEGG TKDQRRQRSE DGPSSDKAKV SERVKPGHTE ETGTSSKAAA GVTGTPVITA
201: KPVGTVLSSV PAPGMDIRVS SANKVKGIGT PVPLATGAVD ERELKRERRK QSNRESARRS RLRKQAETEE LALKVESLSA DNTNLRSEIS RLKENSDKLR
301: LENSALTDKL KNVQSSHFGK MKSVRIPPLV AENFLSMIEN QNSARTAPQE GDTSDQSGGK LHQLLNTSPR RDAVAAS
101: LVKKLKGLDG LALSGGNGII EDRDQADGNS GYNSTEGSSD GSNGDNAEGG TKDQRRQRSE DGPSSDKAKV SERVKPGHTE ETGTSSKAAA GVTGTPVITA
201: KPVGTVLSSV PAPGMDIRVS SANKVKGIGT PVPLATGAVD ERELKRERRK QSNRESARRS RLRKQAETEE LALKVESLSA DNTNLRSEIS RLKENSDKLR
301: LENSALTDKL KNVQSSHFGK MKSVRIPPLV AENFLSMIEN QNSARTAPQE GDTSDQSGGK LHQLLNTSPR RDAVAAS
001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
Arabidopsis Description
GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.