Factsheet for GSMUA_Achr6P00170_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P33130_001	Banana	nucleus	65.6	66.85
GSMUA_Achr9P09280_001	Banana	nucleus	10.67	43.01
HORVU2Hr1G055230.2	Barley	nucleus	13.6	36.96
Zm00001d024285_P001	Maize	nucleus	20.8	36.62
Zm00001d005244_P002	Maize	nucleus	35.73	35.26
Os07t0209800-01	Rice	nucleus	36.27	35.05
TraesCS2A01G245700.2	Wheat	nucleus	35.2	34.92
TraesCS2D01G236200.3	Wheat	nucleus	34.93	34.56
TraesCS2B01G269600.2	Wheat	nucleus	34.67	34.39
Zm00001d019166_P002	Maize	nucleus	35.47	34.28
OQU90776	Sorghum	nucleus, plastid	26.4	32.57
TraesCS5A01G460800.2	Wheat	nucleus	30.4	32.02
TraesCS5B01G470600.1	Wheat	nucleus	30.13	31.65
Os03t0809200-01	Rice	cytosol, nucleus	8.27	31.63
TraesCS5D01G473000.1	Wheat	nucleus	29.87	30.94
Zm00001d034571_P001	Maize	nucleus	29.33	30.9
GSMUA_Achr4P11610_001	Banana	nucleus	24.53	30.87
GSMUA_Achr5P14150_001	Banana	nucleus	33.07	30.85
GSMUA_Achr4P18980_001	Banana	nucleus	32.27	30.02
GSMUA_Achr6P01090_001	Banana	nucleus	33.07	30.02
GSMUA_AchrUn_...	Banana	nucleus	30.4	29.92
GSMUA_Achr4P04530_001	Banana	nucleus	32.8	29.78
HORVU0Hr1G013950.21	Barley	nucleus	26.93	28.77
GSMUA_Achr4P27400_001	Banana	nucleus	31.47	28.71
GSMUA_Achr6P32000_001	Banana	nucleus	28.0	27.85
TraesCS3B01G545800.1	Wheat	nucleus	15.2	24.68
HORVU2Hr1G055160.2	Barley	extracellular, mitochondrion, plastid, vacuole	21.33	24.39
GSMUA_Achr9P05310_001	Banana	nucleus	26.67	24.04
GSMUA_Achr1P05050_001	Banana	nucleus	26.13	23.0
OQU88693	Sorghum	nucleus	36.27	20.61

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G00170_001
EnsemblPlants:GSMUA_Achr6P00170_001	EnsemblPlants:GSMUA_Achr6T00170_001	InterPro:IPR004827	UniProt:M0T2W5	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF125
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002968A9F	InterPro:bZIP	SEG:seg	:

Description

Putative G-box-binding factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00170_001]

Coordinates

chr6:-:138337..143345

Molecular Weight (calculated)

40020.1 Da

IEP (calculated)

9.414

GRAVY (calculated)

-0.857

Length

375 amino acids

Sequence
(BLAST)

001: MPMGSPKEKR TTGASSASTS SKAPREAAPP ATALVPPEWS ASFQAFYDRG AAAAAVMPQA FYSPSPIATA QPVVWGAQQV MPPYGSPIAY ASFYPQGGFY
101: AQPPINAGVA FRTRETEGRP TEAKDNQPTS KRTSKILEGS PGKSGNDGKR ASGAGENASQ SDDSETDGSS DTKEDYDQPK EHSPNRKRSY GNTTEGEGSH
201: SFDTAGNSGT AGRVRTAKKL PVSAPGRAAL RGPPTNLNIG MDFWGASPAG SVPSKVGSSA LNSGPVMIGR SSSILQDERD LRRERRKQSN RESARRSRLR
301: KQQECEELAR RVTDLNNENS ALRVELENLQ KLCGELEAEN KSITGELKQR YGPEFLSELS SSIDASKLQS DVASS

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.