Factsheet for GSMUA_Achr5P14150_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P05050_001
GSMUA_Achr4P04530_001
GSMUA_Achr4P11610_001
GSMUA_Achr4P18980_001
GSMUA_Achr4P27400_001
GSMUA_Achr5P14150_001
GSMUA_Achr6P01090_001
GSMUA_Achr6P32000_001
GSMUA_Achr9P05310_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P01090_001	Banana	nucleus	76.37	74.33
GSMUA_Achr4P18980_001	Banana	nucleus	72.89	72.7
GSMUA_Achr4P27400_001	Banana	nucleus	69.15	67.64
GSMUA_Achr4P04530_001	Banana	nucleus	61.19	59.56
KXG23316	Sorghum	nucleus	55.97	58.44
VIT_02s0012g02250.t01	Wine grape	nucleus	59.7	58.11
Zm00001d041142_P010	Maize	nucleus	53.73	56.54
TraesCS5B01G122000.2	Wheat	nucleus	54.23	56.19
TraesCS5A01G115300.2	Wheat	nucleus	53.98	55.93
TraesCS5D01G124600.1	Wheat	nucleus	53.98	55.93
KRH39598	Soybean	nucleus	56.97	55.31
Solyc08g005290.2.1	Tomato	nucleus	54.23	54.91
Solyc08g076100.2.1	Tomato	nucleus	55.72	54.77
GSMUA_Achr4P11610_001	Banana	nucleus	40.55	54.7
GSMUA_AchrUn_...	Banana	nucleus	51.49	54.33
KRH74331	Soybean	nucleus	55.97	54.22
KRH07569	Soybean	nucleus	55.97	54.09
AT2G35530.1	Thale cress	nucleus	54.73	53.79
KRH45342	Soybean	nucleus	55.72	53.72
Os12t0233800-02	Rice	nucleus	41.54	53.7
CDY31695	Canola	nucleus	52.49	53.42
AT1G32150.1	Thale cress	nucleus	50.99	52.7
PGSC0003DMT400047522	Potato	nucleus	50.0	52.21
TraesCSU01G019200.1	Wheat	nucleus	44.53	51.88
CDY12261	Canola	nucleus	48.51	51.18
TraesCS6A01G087400.2	Wheat	nucleus	44.03	51.01
Os02t0128200-01	Rice	nucleus	44.03	51.01
TraesCS6B01G110100.1	Wheat	nucleus	44.28	51.0
HORVU6Hr1G016240.10	Barley	nucleus	44.28	50.42
CDY22589	Canola	nucleus	47.76	50.13
Bra023243.1-P	Field mustard	nucleus	43.78	50.0
CDY40465	Canola	nucleus	37.31	50.0
Bra005335.1-P	Field mustard	nucleus	52.24	49.76
Zm00001d053967_P001	Maize	nucleus	37.81	48.41
EES04440	Sorghum	nucleus	41.79	48.0
CDY65764	Canola	nucleus	47.76	47.88
Bra023012.1-P	Field mustard	nucleus	47.26	47.15
Zm00001d015118_P001	Maize	nucleus	33.83	46.9
HORVU5Hr1G029130.19	Barley	nucleus	45.27	46.79
Zm00001d039206_P001	Maize	nucleus	24.13	46.63
Zm00001d024041_P002	Maize	nucleus	39.8	46.51
CDX84198	Canola	nucleus	52.74	46.19
CDX84103	Canola	nucleus, plastid	35.07	40.75
Bra017316.1-P	Field mustard	nucleus	25.87	39.39
CDY32123	Canola	nucleus	13.18	34.64
GSMUA_Achr6P32000_001	Banana	nucleus	31.59	33.69
GSMUA_Achr9P09280_001	Banana	nucleus	7.71	33.33
GSMUA_Achr6P00170_001	Banana	nucleus	30.85	33.07
GSMUA_Achr4P33130_001	Banana	nucleus	29.1	31.79
GSMUA_Achr9P05310_001	Banana	nucleus	31.09	30.05
GSMUA_Achr1P05050_001	Banana	nucleus	29.85	28.17

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G14150_001
EnsemblPlants:GSMUA_Achr5P14150_001	EnsemblPlants:GSMUA_Achr5T14150_001	InterPro:IPR004827	UniProt:M0SYE4	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002957590	InterPro:bZIP	SEG:seg	:

Description

Putative Transcription factor HBP-1a [Source:GMGC_GENE;Acc:GSMUA_Achr5G14150_001]

Coordinates

chr5:+:10160338..10166180

Molecular Weight (calculated)

43011.9 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.797

Length

402 amino acids

Sequence
(BLAST)

001: MGGSETDCKG AKTSATQEQP PAASSSPGAA VYPDWSGFQA YSPVLPHGFF HSPVVSSPQS HPYMWGAQHL MPHYGTPPPP YVMYPHGIYA HPSMPPGSHP
101: FSPYAMTPPN GNAEACGSVP ASTGGDAKSS EGKERNPIQR SKGSLGSLNM ITGKNNNELD KGAANGVFSR SGDSESEGSS EGSDTNSHND SEPKTGDGHS
201: PLDETSLNGT SGVITAPSHQ MVPIMPMLAA GVPAAVAGPT TNLNIGMDYW VAPTPSVIPP VRGKVPATTN AGATIPGTLV GSSEKVPSEI WLQDERELKR
301: QRRKQSNRES ARRSRLRKQA EYEELAQRVE VLKEENTALR AEVDRIKKEY DELLSQNTAL QKKIEEKTKE DAIVEMNRQQ AEDKNLDSDP QAGQLDGKHS
401: GH

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.