Factsheet for Solyc08g005290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g095460.2.1
Solyc02g062950.2.1
Solyc02g085610.2.1
Solyc05g050220.2.1
Solyc08g005290.2.1
Solyc08g076100.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	Solyc08g005290.2.1	AT1G32150.1	18315949
AT1G32150.1	Solyc08g076100.2.1	AT1G32150.1	18315949
AT1G32150.1	Solyc08g005290.2.1	AT2G35530.1	18315949
AT1G32150.1	Solyc08g076100.2.1	AT2G35530.1	18315949
AT1G32150.1	Solyc01g095460.2.1	AT2G46270.1	18315949
AT1G32150.1	Solyc05g050220.2.1	AT2G46270.1	18315949
AT1G32150.1	Solyc01g095460.2.1	AT4G01120.1	18315949
AT1G32150.1	Solyc05g050220.2.1	AT4G01120.1	18315949
AT1G32150.1	Solyc02g062950.2.1	AT4G36730.1	18315949
AT1G32150.1	Solyc02g085610.2.1	AT4G36730.1	18315949
AT2G35530.1	Solyc08g005290.2.1	AT1G32150.1	18315949
AT2G35530.1	Solyc08g076100.2.1	AT1G32150.1	18315949
AT2G35530.1	Solyc08g005290.2.1	AT2G35530.1	18315949
AT2G35530.1	Solyc08g076100.2.1	AT2G35530.1	18315949
AT2G35530.1	Solyc01g095460.2.1	AT2G46270.1	18315949
AT2G35530.1	Solyc05g050220.2.1	AT2G46270.1	18315949
AT2G35530.1	Solyc01g095460.2.1	AT4G01120.1	18315949
AT2G35530.1	Solyc05g050220.2.1	AT4G01120.1	18315949
AT2G35530.1	Solyc02g062950.2.1	AT4G36730.1	18315949
AT2G35530.1	Solyc02g085610.2.1	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047522	Potato	nucleus	85.64	88.31
Solyc08g076100.2.1	Tomato	nucleus	81.61	79.22
VIT_02s0012g02250.t01	Wine grape	nucleus	77.08	74.09
KRH39598	Soybean	nucleus	73.55	70.53
KRH74331	Soybean	nucleus	73.05	69.88
KRH45342	Soybean	nucleus	69.02	65.71
KRH07569	Soybean	nucleus	68.26	65.14
AT1G32150.1	Thale cress	nucleus	60.45	61.7
CDY31695	Canola	nucleus	59.7	60.0
CDY12261	Canola	nucleus	57.18	59.58
AT2G35530.1	Thale cress	nucleus	60.96	59.17
Bra023243.1-P	Field mustard	nucleus	52.14	58.81
CDY22589	Canola	nucleus	56.17	58.22
CDY40465	Canola	nucleus	43.32	57.33
KXG23316	Sorghum	nucleus	54.91	56.62
Zm00001d041142_P010	Maize	nucleus	54.16	56.28
Bra005335.1-P	Field mustard	nucleus	59.45	55.92
GSMUA_Achr4P04530_001	Banana	nucleus	57.68	55.45
TraesCS5B01G122000.2	Wheat	nucleus	53.65	54.9
TraesCS5D01G124600.1	Wheat	nucleus	53.4	54.64
TraesCS5A01G115300.2	Wheat	nucleus	53.15	54.38
GSMUA_Achr5P14150_001	Banana	nucleus	54.91	54.23
CDY65764	Canola	nucleus	54.66	54.11
Bra023012.1-P	Field mustard	nucleus	54.66	53.85
GSMUA_Achr6P01090_001	Banana	nucleus	55.16	53.03
GSMUA_Achr4P11610_001	Banana	nucleus	39.8	53.02
GSMUA_Achr4P18980_001	Banana	nucleus	53.65	52.85
TraesCSU01G019200.1	Wheat	nucleus	45.34	52.17
Os02t0128200-01	Rice	nucleus	45.59	52.16
Os12t0233800-02	Rice	nucleus	40.81	52.09
EES04440	Sorghum	nucleus	45.84	52.0
TraesCS6A01G087400.2	Wheat	nucleus	45.09	51.59
TraesCS6B01G110100.1	Wheat	nucleus	45.34	51.58
CDX84198	Canola	nucleus	59.19	51.2
Zm00001d015118_P001	Maize	nucleus	37.28	51.03
GSMUA_AchrUn_...	Banana	nucleus	48.87	50.92
HORVU6Hr1G016240.10	Barley	nucleus	45.09	50.71
Zm00001d039206_P001	Maize	nucleus	26.45	50.48
GSMUA_Achr4P27400_001	Banana	nucleus	50.63	48.91
Zm00001d053967_P001	Maize	nucleus	38.54	48.73
HORVU5Hr1G029130.19	Barley	nucleus	46.6	47.56
Bra017316.1-P	Field mustard	nucleus	31.49	47.35
Zm00001d024041_P002	Maize	nucleus	40.81	47.09
CDX84103	Canola	nucleus, plastid	39.55	45.38
CDY32123	Canola	nucleus	15.37	39.87
Solyc02g085610.2.1	Tomato	nucleus	28.46	39.79
Solyc02g062950.2.1	Tomato	nucleus	33.5	39.0
Solyc01g095460.2.1	Tomato	nucleus	30.73	29.19
Solyc05g050220.2.1	Tomato	nucleus	28.72	27.4

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4CI20	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc08g005290.2
EnsemblPlants:Solyc08g005290.2.1	UniParc:UPI000276B853	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:216588..227934

Molecular Weight (calculated)

42070.4 Da

IEP (calculated)

7.181

GRAVY (calculated)

-0.895

Length

397 amino acids

Sequence
(BLAST)

001: MGSSEMDKSS KEAKEAKESK PPNSQEQTST TTAGPVNQDW SGFQAYSPMP PHGFMASSPQ AHPYMWGVQQ FMPPYGTPPH PYVAMYPHGG IYAHPSIAPG
101: SYPFSPFAMP SPNGVAEASV NNSGNVEVDG KSSEGKEKLP IKRSRGSLGS LNMITGKNNG AGKTSGASAN GVYSKSAESG SEGSSEGSDA HSQNESPMNS
201: GGRQDSADTS QNGNAAHGSQ NGGTGTPHSM INQTMAIVSA AGAGGIPGPT TNLNIGMDYW GAATSSSIPA MHGKVPVSVA GGLVTAGSRD SVQSQMWIQD
301: ERELKRQKRK QSNRESARRS RLRKQAECDE LAQRAEVLKE ENASLRAEVN RIRSEYEHLL AQNASLKERL GEDDPRTGRE DHLPGKNAQH SSQTESQ

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.