Factsheet for GSMUA_Achr4P27400_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P05050_001
GSMUA_Achr4P04530_001
GSMUA_Achr4P11610_001
GSMUA_Achr4P18980_001
GSMUA_Achr4P27400_001
GSMUA_Achr5P14150_001
GSMUA_Achr6P01090_001
GSMUA_Achr6P32000_001
GSMUA_Achr9P05310_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P01090_001	Banana	nucleus	69.83	69.49
GSMUA_Achr5P14150_001	Banana	nucleus	67.64	69.15
GSMUA_Achr4P18980_001	Banana	nucleus	66.91	68.24
VIT_02s0012g02250.t01	Wine grape	nucleus	53.77	53.51
GSMUA_Achr4P04530_001	Banana	nucleus	53.77	53.51
KXG23316	Sorghum	nucleus	49.63	52.99
TraesCS5B01G122000.2	Wheat	nucleus	49.63	52.58
TraesCS5A01G115300.2	Wheat	nucleus	49.63	52.58
TraesCS5D01G124600.1	Wheat	nucleus	49.39	52.32
Solyc08g076100.2.1	Tomato	nucleus	51.09	51.34
Zm00001d041142_P010	Maize	nucleus	47.45	51.05
Os12t0233800-02	Rice	nucleus	38.44	50.8
Solyc08g005290.2.1	Tomato	nucleus	48.91	50.63
KRH45342	Soybean	nucleus	51.09	50.36
GSMUA_AchrUn_...	Banana	nucleus	46.47	50.13
KRH07569	Soybean	nucleus	50.37	49.76
GSMUA_Achr4P11610_001	Banana	nucleus	36.01	49.66
KRH39598	Soybean	nucleus	49.88	49.52
KRH74331	Soybean	nucleus	49.63	49.16
Os02t0128200-01	Rice	nucleus	41.12	48.7
TraesCSU01G019200.1	Wheat	nucleus	40.88	48.7
EES04440	Sorghum	nucleus	41.12	48.29
TraesCS6A01G087400.2	Wheat	nucleus	40.63	48.13
Zm00001d053967_P001	Maize	nucleus	36.74	48.09
HORVU6Hr1G016240.10	Barley	nucleus	40.88	47.59
TraesCS6B01G110100.1	Wheat	nucleus	40.39	47.56
CDY31695	Canola	nucleus	45.26	47.09
PGSC0003DMT400047522	Potato	nucleus	44.04	47.01
AT1G32150.1	Thale cress	nucleus	44.28	46.79
Zm00001d039206_P001	Maize	nucleus	23.36	46.15
Zm00001d015118_P001	Maize	nucleus	32.36	45.86
AT2G35530.1	Thale cress	nucleus	45.26	45.48
CDY12261	Canola	nucleus	42.09	45.41
Bra023243.1-P	Field mustard	nucleus	38.44	44.89
CDY22589	Canola	nucleus	41.36	44.39
Bra005335.1-P	Field mustard	nucleus	45.26	44.08
HORVU5Hr1G029130.19	Barley	nucleus	41.61	43.96
Bra023012.1-P	Field mustard	nucleus	40.63	41.44
CDY65764	Canola	nucleus	39.9	40.9
Zm00001d024041_P002	Maize	nucleus	34.06	40.7
CDY40465	Canola	nucleus	29.68	40.67
CDX84198	Canola	nucleus	44.77	40.09
CDX84103	Canola	nucleus, plastid	32.12	38.15
GSMUA_Achr9P09280_001	Banana	nucleus	7.54	33.33
Bra017316.1-P	Field mustard	nucleus	20.92	32.58
GSMUA_Achr6P00170_001	Banana	nucleus	28.71	31.47
GSMUA_Achr6P32000_001	Banana	nucleus	28.22	30.77
CDY32123	Canola	nucleus	11.44	30.72
GSMUA_Achr4P33130_001	Banana	nucleus	26.52	29.62
GSMUA_Achr9P05310_001	Banana	nucleus	28.71	28.37
GSMUA_Achr1P05050_001	Banana	nucleus	27.49	26.53

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G27400_001	EnsemblPlants:GSMUA_Achr4P27400_001	EnsemblPlants:GSMUA_Achr4T27400_001	InterPro:IPR004827
UniProt:M0SSK2	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002951F76
InterPro:bZIP	SEG:seg	:	:	:	:

Description

Putative Transcription factor HBP-1a [Source:GMGC_GENE;Acc:GSMUA_Achr4G27400_001]

Coordinates

chr4:+:26245846..26250135

Molecular Weight (calculated)

44539.7 Da

IEP (calculated)

5.466

GRAVY (calculated)

-0.782

Length

411 amino acids

Sequence
(BLAST)

001: MGGREADTKG PRTSVALEHP PATSSSPSAA VYPEWSGFQA YPSIPPHGFF HSPVVSSPQA HPYMWGAQHL LPPYGTPPPP YVMYPHGIYT QPSVPPGSQP
101: FSPYAMTYPN GSAETCKSVP AITEGDIKSS EGKERNSIQR LKGSLGSLNI IAGKNSNEPD KTSVAGDRVL SQSDSGSDDS SEGSDAKSED DLEQKTRGKQ
201: ELLDEISRNG TNGVITAPTW ATSHQTMPIM HMLPAGVPGV VAGPTTNLSI GMDYWVSPTS AIPPEHGKVP AAAATGAMIS GALVGATEKV PSEIWQQDER
301: ELKRQRRKQS NRESARRSRL RKQAEYEELA QRVEALRDEN AALQAEVEQI KKEYDALVAL NATLKERTGE TTKEKEDLII KERSHHADDN VQRNMDSDPP
401: TGPSENNQID Q

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.