CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04440
EES18712
KXG23316
KXG33037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	EES04440	AT1G32150.1	18315949
AT1G32150.1	KXG23316	AT1G32150.1	18315949
AT1G32150.1	EES04440	AT2G35530.1	18315949
AT1G32150.1	KXG23316	AT2G35530.1	18315949
AT1G32150.1	EES18712	AT2G46270.1	18315949
AT1G32150.1	KXG33037	AT2G46270.1	18315949
AT1G32150.1	EES18712	AT4G01120.1	18315949
AT1G32150.1	KXG33037	AT4G01120.1	18315949
AT2G35530.1	EES04440	AT1G32150.1	18315949
AT2G35530.1	KXG23316	AT1G32150.1	18315949
AT2G35530.1	EES04440	AT2G35530.1	18315949
AT2G35530.1	KXG23316	AT2G35530.1	18315949
AT2G35530.1	EES18712	AT2G46270.1	18315949
AT2G35530.1	KXG33037	AT2G46270.1	18315949
AT2G35530.1	EES18712	AT4G01120.1	18315949
AT2G35530.1	KXG33037	AT4G01120.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041142_P010	Maize	nucleus	93.25	93.98
Zm00001d024041_P002	Maize	nucleus	71.95	80.52
TraesCS5B01G122000.2	Wheat	nucleus	80.52	79.9
Os12t0233800-02	Rice	nucleus	64.42	79.74
TraesCS5A01G115300.2	Wheat	nucleus	80.26	79.64
TraesCS5D01G124600.1	Wheat	nucleus	80.26	79.64
HORVU5Hr1G029130.19	Barley	nucleus	69.61	68.89
GSMUA_Achr4P04530_001	Banana	nucleus	62.08	57.87
GSMUA_Achr4P11610_001	Banana	nucleus	43.64	56.38
EES04440	Sorghum	nucleus	50.91	56.0
GSMUA_Achr5P14150_001	Banana	nucleus	58.44	55.97
VIT_02s0012g02250.t01	Wine grape	nucleus	59.22	55.21
Solyc08g005290.2.1	Tomato	nucleus	56.62	54.91
GSMUA_AchrUn_...	Banana	nucleus	54.29	54.86
KRH39598	Soybean	nucleus	58.18	54.11
Bra023243.1-P	Field mustard	nucleus	49.35	53.98
CDY12261	Canola	nucleus	53.25	53.81
Solyc08g076100.2.1	Tomato	nucleus	57.14	53.79
AT1G32150.1	Thale cress	nucleus	54.29	53.73
KRH74331	Soybean	nucleus	57.66	53.49
CDY22589	Canola	nucleus	52.21	52.48
KRH07569	Soybean	nucleus	56.36	52.16
KRH45342	Soybean	nucleus	56.36	52.04
GSMUA_Achr6P01090_001	Banana	nucleus	55.58	51.82
GSMUA_Achr4P18980_001	Banana	nucleus	54.03	51.61
AT2G35530.1	Thale cress	nucleus	54.03	50.86
PGSC0003DMT400047522	Potato	nucleus	50.65	50.65
CDY31695	Canola	nucleus	51.43	50.13
GSMUA_Achr4P27400_001	Banana	nucleus	52.99	49.63
CDY40465	Canola	nucleus	36.88	47.33
Bra005335.1-P	Field mustard	nucleus	51.17	46.68
Bra023012.1-P	Field mustard	nucleus	47.79	45.66
CDY65764	Canola	nucleus	47.53	45.64
OQU92933	Sorghum	nucleus	44.16	44.5
CDX84198	Canola	nucleus	52.21	43.79
CDX84103	Canola	nucleus, plastid	35.58	39.6
CDY32123	Canola	nucleus	15.06	37.91
Bra017316.1-P	Field mustard	nucleus	25.97	37.88
EES18712	Sorghum	nucleus	28.83	29.06
OQU90776	Sorghum	nucleus, plastid	21.56	27.3
KXG33037	Sorghum	nucleus	25.45	19.76
OQU88693	Sorghum	nucleus	31.43	18.33

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A0A1B6PCH3	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	EnsemblPlants:KXG23316	ProteinID:KXG23316	ProteinID:KXG23316.1	ProteinID:KXG23317.1	InterPro:MFMR
PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF47	SMART:SM00338	EnsemblPlantsGene:SORBI_3008G083200	SUPFAM:SSF57959	UniParc:UPI00022072B2	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:15834365..15839697

Molecular Weight (calculated)

40847.8 Da

IEP (calculated)

7.430

GRAVY (calculated)

-1.042

Length

385 amino acids

Sequence
(BLAST)

001: MGSSGADTPS KTTKASAPQE QQPPATSGAA TPAVYPDWSS FQAYPPIPPH GFFPSPVASS PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG
101: AHPFTPYAIT SPNGNADATG TTAAAGDTDG KPSEGKDKSP TKRSKGSLGS LNMLTGKNTG EHGKTSGASA NGATSQSGES GSDSSSEGSE ENSHNDSHHK
201: ESGQEQDGDV RSSQNGASRS PSEGKLNQAM TIVPMPSSGP VTGPTTNLNI GMDYWANTAS SAPAIHGKVT PTTVPGAVVP AEQWIQDERE LKRQRRKQSN
301: RESARRSRLR KQAECEELAQ RADVLKQENA SLRDEVNRIR KEYEELLSKN NSLKEKLEGK QHKTDEAGLN NKLQHSGDDS QKKGN

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.