Factsheet for GSMUA_Achr4P18980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P05050_001
GSMUA_Achr4P04530_001
GSMUA_Achr4P11610_001
GSMUA_Achr4P18980_001
GSMUA_Achr4P27400_001
GSMUA_Achr5P14150_001
GSMUA_Achr6P01090_001
GSMUA_Achr6P32000_001
GSMUA_Achr9P05310_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14150_001	Banana	nucleus	72.7	72.89
GSMUA_Achr6P01090_001	Banana	nucleus	70.97	69.25
GSMUA_Achr4P27400_001	Banana	nucleus	68.24	66.91
VIT_02s0012g02250.t01	Wine grape	nucleus	56.58	55.21
GSMUA_Achr4P04530_001	Banana	nucleus	55.58	54.24
KXG23316	Sorghum	nucleus	51.61	54.03
Solyc08g005290.2.1	Tomato	nucleus	52.85	53.65
Solyc08g076100.2.1	Tomato	nucleus	54.34	53.55
TraesCS5B01G122000.2	Wheat	nucleus	50.62	52.58
TraesCS5D01G124600.1	Wheat	nucleus	50.37	52.32
TraesCS5A01G115300.2	Wheat	nucleus	50.37	52.32
KRH39598	Soybean	nucleus	53.6	52.17
Zm00001d041142_P010	Maize	nucleus	49.13	51.83
KRH74331	Soybean	nucleus	53.1	51.57
Os12t0233800-02	Rice	nucleus	39.7	51.45
GSMUA_AchrUn_...	Banana	nucleus	48.64	51.44
GSMUA_Achr4P11610_001	Banana	nucleus	37.97	51.34
Zm00001d015118_P001	Maize	nucleus	35.98	50.0
PGSC0003DMT400047522	Potato	nucleus	47.15	49.35
CDY31695	Canola	nucleus	48.14	49.11
AT1G32150.1	Thale cress	nucleus	47.39	49.1
KRH07569	Soybean	nucleus	50.62	49.04
Os02t0128200-01	Rice	nucleus	42.18	48.99
KRH45342	Soybean	nucleus	50.62	48.92
EES04440	Sorghum	nucleus	42.18	48.57
AT2G35530.1	Thale cress	nucleus	48.88	48.17
TraesCSU01G019200.1	Wheat	nucleus	41.19	48.12
Zm00001d039206_P001	Maize	nucleus	24.81	48.08
CDY40465	Canola	nucleus	35.48	47.67
Zm00001d053967_P001	Maize	nucleus	36.97	47.45
TraesCS6A01G087400.2	Wheat	nucleus	40.69	47.26
TraesCS6B01G110100.1	Wheat	nucleus	40.69	46.99
HORVU6Hr1G016240.10	Barley	nucleus	40.94	46.74
CDY12261	Canola	nucleus	44.17	46.72
Bra023243.1-P	Field mustard	nucleus	40.45	46.31
Bra005335.1-P	Field mustard	nucleus	47.89	45.73
CDY22589	Canola	nucleus	43.42	45.69
HORVU5Hr1G029130.19	Barley	nucleus	43.92	45.5
Zm00001d024041_P002	Maize	nucleus	36.72	43.02
CDY65764	Canola	nucleus	42.43	42.64
CDX84198	Canola	nucleus	48.39	42.48
Bra023012.1-P	Field mustard	nucleus	41.94	41.94
Bra017316.1-P	Field mustard	nucleus	24.57	37.5
CDX84103	Canola	nucleus, plastid	31.02	36.13
GSMUA_Achr9P09280_001	Banana	nucleus	8.19	35.48
GSMUA_Achr6P00170_001	Banana	nucleus	30.02	32.27
GSMUA_Achr4P33130_001	Banana	nucleus	29.28	32.07
CDY32123	Canola	nucleus	12.16	32.03
GSMUA_Achr6P32000_001	Banana	nucleus	28.54	30.5
GSMUA_Achr1P05050_001	Banana	nucleus	28.78	27.23
GSMUA_Achr9P05310_001	Banana	nucleus	27.3	26.44

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G18980_001
EnsemblPlants:GSMUA_Achr4P18980_001	EnsemblPlants:GSMUA_Achr4T18980_001	InterPro:IPR004827	UniProt:M0SQ61	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00029660C2	InterPro:bZIP	:	:

Description

Putative Transcription factor HBP-1a [Source:GMGC_GENE;Acc:GSMUA_Achr4G18980_001]

Coordinates

chr4:-:20026824..20031569

Molecular Weight (calculated)

43819.0 Da

IEP (calculated)

5.863

GRAVY (calculated)

-0.750

Length

403 amino acids

Sequence
(BLAST)

001: MFWFYLVQEQ PPATSARPSV SVYPEWSGFQ AYSPMLPHGF FHSPMVSSPQ AHPYMWGAQQ FMPTYGTPPP PYVMYPHGVY PHPSVPPGLH PFSPYATTFS
101: NGTAEACGSV PASTGDAKSS EGKERIPIQR SKGSLGSLNM ITGKKDNELD KTSGAANGVL APSSDSGNED SSERSDAYSL TDSEPKTGVG QRPPDETSQN
201: GTSGIMTAQS HATLHQTMQI MPMLAAGVPG VVSGPTTNLN IGMDYWTAPT PSAISPLHGK VSATATTGSM VPGSLVEASE RVPSEIWLQD ERELKRQRRK
301: QSNRESARRS RLRKQAEYEE LAQRVEVLKE ENSALRAEVD RIKKEYDGLI AQNGSLQERT GEQTKEEEDA IIKKCNQCAE DNTKRNLVSD PQAGQSDDKQ
401: GGQ

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.