Factsheet for PGSC0003DMT400047522

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000266
PGSC0003DMT400032960
PGSC0003DMT400047522
PGSC0003DMT400084203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	PGSC0003DMT400047522	AT1G32150.1	18315949
AT1G32150.1	PGSC0003DMT400047522	AT2G35530.1	18315949
AT1G32150.1	PGSC0003DMT400000266	AT2G46270.1	18315949
AT1G32150.1	PGSC0003DMT400084203	AT2G46270.1	18315949
AT1G32150.1	PGSC0003DMT400000266	AT4G01120.1	18315949
AT1G32150.1	PGSC0003DMT400084203	AT4G01120.1	18315949
AT1G32150.1	PGSC0003DMT400032960	AT4G36730.1	18315949
AT2G35530.1	PGSC0003DMT400047522	AT1G32150.1	18315949
AT2G35530.1	PGSC0003DMT400047522	AT2G35530.1	18315949
AT2G35530.1	PGSC0003DMT400000266	AT2G46270.1	18315949
AT2G35530.1	PGSC0003DMT400084203	AT2G46270.1	18315949
AT2G35530.1	PGSC0003DMT400000266	AT4G01120.1	18315949
AT2G35530.1	PGSC0003DMT400084203	AT4G01120.1	18315949
AT2G35530.1	PGSC0003DMT400032960	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005290.2.1	Tomato	nucleus	88.31	85.64
VIT_02s0012g02250.t01	Wine grape	nucleus	69.61	64.89
KRH39598	Soybean	nucleus	67.01	62.32
KRH74331	Soybean	nucleus	67.01	62.17
KRH45342	Soybean	nucleus	63.9	58.99
KRH07569	Soybean	nucleus	63.38	58.65
Bra023243.1-P	Field mustard	nucleus	50.39	55.11
AT1G32150.1	Thale cress	nucleus	54.81	54.24
CDY31695	Canola	nucleus	54.55	53.16
AT2G35530.1	Thale cress	nucleus	56.1	52.81
CDY12261	Canola	nucleus	51.69	52.23
CDY40465	Canola	nucleus	40.26	51.67
CDY22589	Canola	nucleus	50.91	51.17
KXG23316	Sorghum	nucleus	50.65	50.65
Zm00001d041142_P010	Maize	nucleus	49.87	50.26
GSMUA_Achr5P14150_001	Banana	nucleus	52.21	50.0
GSMUA_Achr4P04530_001	Banana	nucleus	53.25	49.64
Bra005335.1-P	Field mustard	nucleus	54.29	49.53
TraesCS5B01G122000.2	Wheat	nucleus	49.09	48.71
CDY65764	Canola	nucleus	50.65	48.63
TraesCS5D01G124600.1	Wheat	nucleus	48.83	48.45
TraesCS5A01G115300.2	Wheat	nucleus	48.83	48.45
Bra023012.1-P	Field mustard	nucleus	50.65	48.39
Zm00001d053967_P001	Maize	nucleus	38.96	47.77
GSMUA_Achr6P01090_001	Banana	nucleus	50.65	47.22
GSMUA_Achr4P18980_001	Banana	nucleus	49.35	47.15
TraesCSU01G019200.1	Wheat	nucleus	41.56	46.38
EES04440	Sorghum	nucleus	41.82	46.0
GSMUA_AchrUn_...	Banana	nucleus	45.45	45.93
TraesCS6A01G087400.2	Wheat	nucleus	41.3	45.82
Zm00001d039206_P001	Maize	nucleus	24.68	45.67
Os02t0128200-01	Rice	nucleus	41.04	45.53
CDX84198	Canola	nucleus	54.03	45.32
TraesCS6B01G110100.1	Wheat	nucleus	41.04	45.27
HORVU6Hr1G016240.10	Barley	nucleus	41.3	45.04
GSMUA_Achr4P11610_001	Banana	nucleus	34.81	44.97
Os12t0233800-02	Rice	nucleus	35.84	44.37
Zm00001d015118_P001	Maize	nucleus	33.25	44.14
GSMUA_Achr4P27400_001	Banana	nucleus	47.01	44.04
HORVU5Hr1G029130.19	Barley	nucleus	41.82	41.39
Zm00001d024041_P002	Maize	nucleus	36.88	41.28
Bra017316.1-P	Field mustard	nucleus	28.05	40.91
CDY32123	Canola	nucleus	15.84	39.87
CDX84103	Canola	nucleus, plastid	35.58	39.6
PGSC0003DMT400032960	Potato	nucleus	30.13	29.0
PGSC0003DMT400000266	Potato	nucleus	27.79	25.66
PGSC0003DMT400084203	Potato	nucleus	27.01	25.18

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:M1BKX7	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	EnsemblPlantsGene:PGSC0003DMG400018469
PGSC:PGSC0003DMG400018469	EnsemblPlants:PGSC0003DMT400047522	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002966CD9	InterPro:bZIP	SEG:seg	:

Description

G-Box binding protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400018469]

Coordinates

chr8:+:3982075..3991305

Molecular Weight (calculated)

41154.2 Da

IEP (calculated)

8.834

GRAVY (calculated)

-0.700

Length

385 amino acids

Sequence
(BLAST)

001: MGSSEMDKSP KEAKQAKESK PPNSQEQTST TTAGPVNQDW SGFQAYSPMP PHGFMASSPQ AHPYMWGVQQ FMPPYGTPPH PYVAMYPHGG IYAHPSIAPG
101: SYPFSPFAMP SPNGVAEASV NNSGNVEVDG KSSEGKEKLP IKRSRGSLGS LNMITGKNNG PERCGCDWFV VGGRTPEHEA KLLGLGCGVT IRESPMNSGG
201: RQDSADTSQN GNAAHGSQNG GTGTPHSMIN QTMAIVSAAG AGGIPGPTTN LNIGMDYWGA ATSSSIPAMH GKVPVSVAGG LVTAGSRDSV QSQMWIQDER
301: ELKRQKRKQS NRESARRSRL RKQAECDELA QRAEVLKEEN ASLRAEVNRI RSEYEHLLAQ NASLKVFSST LNKDNFKDLP QGLTA

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.