CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69240
CDX75592
CDX80004
CDX84103
CDX84198
CDX95685
CDY07176
CDY12261
CDY22589
CDY24770
CDY31695
CDY32123
CDY35476
CDY40465
CDY42029
CDY48506
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35530.1	CDX84103	AT1G32150.1	18315949
AT2G35530.1	CDY12261	AT1G32150.1	18315949
AT2G35530.1	CDY22589	AT1G32150.1	18315949
AT2G35530.1	CDX84198	AT2G35530.1	18315949
AT2G35530.1	CDY31695	AT2G35530.1	18315949
AT2G35530.1	CDY32123	AT2G35530.1	18315949
AT2G35530.1	CDY40465	AT2G35530.1	18315949
AT2G35530.1	CDY65764	AT2G35530.1	18315949
AT2G35530.1	CDX80004	AT2G46270.1	18315949
AT2G35530.1	CDX95685	AT2G46270.1	18315949
AT2G35530.1	CDY42029	AT2G46270.1	18315949
AT2G35530.1	CDY07176	AT4G01120.1	18315949
AT2G35530.1	CDY48506	AT4G01120.1	18315949
AT2G35530.1	CDX69240	AT4G36730.1	18315949
AT2G35530.1	CDX75592	AT4G36730.1	18315949
AT2G35530.1	CDY24770	AT4G36730.1	18315949
AT2G35530.1	CDY35476	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31695	Canola	nucleus	83.44	96.96
Bra005335.1-P	Field mustard	nucleus	83.01	90.28
AT2G35530.1	Thale cress	nucleus	75.82	85.09
CDY40465	Canola	nucleus	51.63	79.0
CDY65764	Canola	nucleus	64.49	73.82
CDY12261	Canola	nucleus	57.52	69.29
CDY22589	Canola	nucleus	56.64	67.89
VIT_02s0012g02250.t01	Wine grape	nucleus	54.03	60.05
Solyc08g005290.2.1	Tomato	nucleus	51.2	59.19
KRH39598	Soybean	nucleus	53.16	58.94
KRH74331	Soybean	nucleus	52.51	58.07
Solyc08g076100.2.1	Tomato	nucleus	50.98	57.21
KRH45342	Soybean	nucleus	50.98	56.12
KRH07569	Soybean	nucleus	50.76	56.01
PGSC0003DMT400047522	Potato	nucleus	45.32	54.03
GSMUA_Achr5P14150_001	Banana	nucleus	46.19	52.74
GSMUA_Achr4P04530_001	Banana	nucleus	47.06	52.3
KXG23316	Sorghum	nucleus	43.79	52.21
TraesCS5D01G124600.1	Wheat	nucleus	44.01	52.06
TraesCS5A01G115300.2	Wheat	nucleus	44.01	52.06
TraesCS5B01G122000.2	Wheat	nucleus	44.01	52.06
Zm00001d041142_P010	Maize	nucleus	42.7	51.31
GSMUA_Achr4P11610_001	Banana	nucleus	32.9	50.67
Os12t0233800-02	Rice	nucleus	33.77	49.84
GSMUA_AchrUn_...	Banana	nucleus	40.96	49.34
Zm00001d039206_P001	Maize	nucleus	22.0	48.56
GSMUA_Achr4P18980_001	Banana	nucleus	42.48	48.39
CDX84103	Canola	nucleus, plastid	36.17	47.98
GSMUA_Achr6P01090_001	Banana	nucleus	42.7	47.46
TraesCS6A01G087400.2	Wheat	nucleus	35.29	46.69
TraesCSU01G019200.1	Wheat	nucleus	35.08	46.67
TraesCS6B01G110100.1	Wheat	nucleus	35.29	46.42
Os02t0128200-01	Rice	nucleus	35.08	46.4
EES04440	Sorghum	nucleus	35.29	46.29
Zm00001d015118_P001	Maize	nucleus	28.98	45.86
HORVU6Hr1G016240.10	Barley	nucleus	34.86	45.33
HORVU5Hr1G029130.19	Barley	nucleus	38.34	45.24
GSMUA_Achr4P27400_001	Banana	nucleus	40.09	44.77
CDY32123	Canola	nucleus	14.6	43.79
Zm00001d024041_P002	Maize	nucleus	32.68	43.6
Zm00001d053967_P001	Maize	nucleus	29.41	42.99
CDX69240	Canola	nucleus	27.89	40.89
CDX75592	Canola	nucleus	27.67	40.58
CDY24770	Canola	nucleus	27.23	39.94
CDY35476	Canola	nucleus	27.23	39.94
CDY48506	Canola	nucleus	21.57	27.12
CDX95685	Canola	nucleus	17.65	27.0
CDY07176	Canola	nucleus	21.35	27.0
CDY42029	Canola	nucleus	23.75	26.33
CDX80004	Canola	golgi	23.75	24.61

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078DA40	EnsemblPlants:CDX84198	ProteinID:CDX84198	ProteinID:CDX84198.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00141249001	InterPro:IPR004827	InterPro:MFMR
PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF47	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EEDF07	InterPro:bZIP	SEG:seg

Description

BnaC04g09600D

Coordinates

chrLK031836:+:712733..716718

Molecular Weight (calculated)

49874.0 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.861

Length

459 amino acids

Sequence
(BLAST)

001: MERNRSRRYV VFAAVRESEE KRFTAVREIE EERFLSFFSL LDSHRIPSFV LRVFRHHPVV RYLSLVIMAS NEMEKSSKEK EPTTPPPPPS SQEPSSAVSA
101: GMATPDWSGF QAYSPMPPHG FVASSPQPHP YMWGVQHMIP PYGTPPHPYV AMYPPGGMYG HPSMPPGSYP YSPYAMPSPN GMTEASGNTT GGTEGGDAKQ
201: SEVKEKLPIK RSRGSLGSLN MITGKNNEPG KNSGASANGA YSKSGESASD GSSEGSDANS QNGSGSGQEG KDENGDSANA PRNGTPVSQT VPIMPMPAAG
301: PPTNLNIGME YWGAPTSAAI PGMHGKASTP VPGVAAPVSR DGGHSQPWLQ DDREIKRQKR KQSNRESARR SRLRKQAECD ELAQRAELLN EENASLRAEI
401: NRLKSQCDEL TSENTSLKDQ LLSFPSLEAI NMDKDDQEPE AYQTGVTERK VDDTYKNST

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.